>retro_meug_1696
ATGAAAGAACTTGGTGTCATCTTTTACAACTACAACTAGCTGGTCTTAGACTTCCAAACAACATTTGTCCTGTATAGCTG
ATTAAAATACAAGAGCAGAGCGCCTCCAACTTGGTCAAAGGAGTTGTATGGAGTGTATGACAAGCAAAAAAACATGGCAA
CTTCAGCTGAATGAAACAAAGTCTCAGGCATTTGTGTCGAATTCTCCTACATAGTCTGTTGCTCTAGAAATAGGAGCTTC
GACAGAGATGCCATCTATAGTGTCACTGACGATGCGAAGGACTTGGGTTCATTGCTGTAAGGGATTATCTCCCTGGACTT
ACACAAGCACCAGAAGAACTTACTGGCCACATTTGGATGGGAAAAACAAGAGAAGCATTCGTTTTAGGAAGAGTTGAAGT
TCGACTCGTCAGTTTCTGGAAAGAAACAGATCCCCTCATTGAACTTTATTTCATATCTAAAAGTATTTGCACTGAAATTG
CTAACTACAGTTTGAAA
ORF - retro_meug_1696 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
69.94 % |
Parental protein coverage: |
59.22 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | MKELGVIFYNCSCLVLDLQRIFALYSSLRYKSRVPQTWSKRLYGVYDNQKKL-QLQLNETKSQAFVSNSP |
| MKELGVIFYN...LVLD.Q..F.LYS.L.YKSR.P.TWSK.LYGVYD.QK...QLQLNETKSQAFVSNSP |
Retrocopy | MKELGVIFYNYN*LVLDFQTTFVLYS*LKYKSRAPPTWSKELYGVYDKQKNM>QLQLNETKSQAFVSNSP |
|
Parental | K-VFC-PKNRSFDIDAIYSVIDDAKE-FVFIAVMDYL-PVSNTSTKRTYWPDLD-GKIREALVLRRVKVR |
| ....C...NRSFD.DAIYSV.DDAK....FIAV.DYL.P...TST.RTYWP.LD.GK.REA.VL.RV.VR |
Retrocopy | T<IVCCSRNRSFDRDAIYSVTDDAKD<LGFIAVRDYL<PWTYTSTRRTYWPHLD>GKTREAFVLGRVEVR |
|
Parental | LLISFWKETDPLTFNFVSSLKAICTEIANCSLK |
| .L.SFWKETDPL......S.K.ICTEIAN.SLK |
Retrocopy | -LVSFWKETDPLIELYFIS-KSICTEIANYSLK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1696 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1696 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.