RetrogeneDB ID: | retro_meug_1713 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold54487:5408..5899(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLTSCR2 | ||
Ensembl ID: | ENSMEUG00000002525 | ||
Aliases: | None | ||
Description: | glioma tumor suppressor candidate region gene 2 [Source:HGNC Symbol;Acc:4333] |
Percent Identity: | 79.29 % |
Parental protein coverage: | 54.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SKVPSPKNILAHQIPNGKKLKRKQRLWEHLAQQGKLPR-DVRKAQARLLQPPEPKTKPSDPEETTD-RPF |
SK.PSPKNILAHQIP..K.LK.KQRL..HLAQQGKLP...V.KAQA.LLQPPE.K.KPSDPEETTD.RPF | |
Retrocopy | SKLPSPKNILAHQIPSRKNLK*KQRLLQHLAQQGKLPQ<TVLKAQAWLLQPPESKIKPSDPEETTD>RPF |
Parental | YDLWAEDNPLDRPLVGQDTFFLEQTKKKGVKRPQRLQTKPSRAPAVE-VISSGGSYNPSFQAHQALLLEA |
Y.LWAEDNPLD.PL.GQDT.FLEQ.KK..VK.PQ.LQTKPS.AP.VE..ISSGGSY.PSFQA.QALLLEA | |
Retrocopy | YNLWAEDNPLDLPLFGQDT-FLEQMKKV-VKQPQGLQTKPSLAPVVE<RISSGGSYSPSFQAYQALLLEA |
Parental | HKVELQRQKVEEKLSRQLAFPTVDEAPTK |
H.VEL.RQKVEEKLS.QLAFPTV.E.PTK | |
Retrocopy | HEVELKRQKVEEKLSHQLAFPTVNEGPTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000105373 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002525 | 2 retrocopies |
retro_meug_1136, retro_meug_1713 ,
|
Nomascus leucogenys | ENSNLEG00000003143 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010181 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000011215 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013023 | 1 retrocopy |