RetrogeneDB ID: | retro_meug_1728 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold55054:7026..7527(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | COQ9 | ||
| Ensembl ID: | ENSMEUG00000014726 | ||
| Aliases: | None | ||
| Description: | coenzyme Q9 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25302] |
Retrocopy-Parental alignment summary:
>retro_meug_1728
CAATGCTAAACTTAGTCGTGTCATGTAATGGAAGAGGAAGAAAAGCTCATGTAGTTCGGCCAGGCAGAGAAAAGGAAGAC
AGACCAGTTCCTAAGGGATACAGTGGAAACCAGGCTGAGAATGCTGACCCCATATATTGAACATTGACCCCAGGTCCTAG
GCATCCTTGTGCTCCTTTGTAATATCTCAGTCAGACTAAGCCTCCTCAACAATATTGTAGATGACATGTGGTACTCTGCA
GGAGACCAGTCCACTGATATTGACTGGTACACACATAAGGCAGTATTGGTTGGCATTTATAACACTACAGAGCTAGTGAT
GATGCTGGACTCATCTCCTGACTTTGAAGACACTTGGTGCTTCCTTGAAAACAGGATCAATGTTGCCATGAACATGGGAC
ACACAGTCAAACAGATAGGATCTACTGGGGAAGCACTTGTGCAGGGAATGATGGGAACAACTGTGACTCTCAACAACTTA
ACAAGCCTAAACCAGCATCAA
ORF - retro_meug_1728 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.46 % |
| Parental protein coverage: | 52.68 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | QCNAKLSRVMEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHWPRALGILVLPHNIPASLNLLT |
| QC......VMEEE.KL...GQAEKRKTDQFLRD.VETRLRML.PYIEH.P..LGILVL..NI...L.LL. | |
| Retrocopy | QC*T*SCHVMEEEEKLM*FGQAEKRKTDQFLRDTVETRLRMLTPYIEH*PQVLGILVLLCNISVRLSLLN |
| Parental | SMVDDIWHYAGDQSTDXXXXTRRAVLVGIYNTTELVMMQDSSPDFEDTWRFLENRISDAMNMGHTAKQVK |
| ..VDD.W..AGDQSTD....T..AVLVGIYNTTELVMM.DSSPDFEDTW.FLENRI..AMNMGHT.KQ.. | |
| Retrocopy | NIVDDMWYSAGDQSTDIDWYTHKAVLVGIYNTTELVMMLDSSPDFEDTWCFLENRINVAMNMGHTVKQIG |
| Parental | STGEALVQGMMGAAVTLKNLTGLNQRR |
| STGEALVQGMMG..VTL.NLT.LNQ.. | |
| Retrocopy | STGEALVQGMMGTTVTLNNLTSLNQHQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1728 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1728 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000014726 | 2 retrocopies |
retro_meug_1728 , retro_meug_495,
|
| Macaca mulatta | ENSMMUG00000020473 | 1 retrocopy | |
| Monodelphis domestica | ENSMODG00000013530 | 1 retrocopy |