RetrogeneDB ID: | retro_meug_1734 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold5563:1775..2325(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAP30BP | ||
Ensembl ID: | ENSMEUG00000013106 | ||
Aliases: | None | ||
Description: | SAP30 binding protein [Source:HGNC Symbol;Acc:30785] |
Percent Identity: | 77.01 % |
Parental protein coverage: | 59.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AGSATAAEEKGGLVSEAYGDDDFSRLEGDEAGYEEEDEENSRQSEDDDSETEKPEADDLKEFSELEKRDP |
AGS.T..EEKG.LVSE..GDD....LEGDE.GYEEE.EEN.RQSE.DDSETEKPE..DLKEF.ELEKRDP | |
Retrocopy | AGSMTSVEEKGELVSEVHGDD-VPELEGDEDGYEEENEENRRQSEHDDSETEKPEDHDLKEFPELEKRDP |
Parental | QELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDM-NYIIQRKKEFR-NPSIYE |
..L.ASFSER.RNM.PDEIKIPP.PPGRCSNHLQDKIQKLYE.KIKE..DM......R...FR.NP.IYE | |
Retrocopy | KKLAASFSERIRNMAPDEIKIPPKPPGRCSNHLQDKIQKLYEWKIKERIDMRTTLFRRRRSFR<NPNIYE |
Parental | KLIQYCSIDELGTNYPKDMFDPHGWSEDSYYE-ALAKAQKIEMDKLE |
.LIQYCSIDELGTNYPKDMFDPHGWSEDSYYE..LAKAQ..EMDKL. | |
Retrocopy | NLIQYCSIDELGTNYPKDMFDPHGWSEDSYYE<GLAKAQNTEMDKLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ficedula albicollis | ENSFALG00000001071 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013106 | 2 retrocopies |
retro_meug_1388, retro_meug_1734 ,
|
Monodelphis domestica | ENSMODG00000007562 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017878 | 2 retrocopies | |
Taeniopygia guttata | ENSTGUG00000008426 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009667 | 2 retrocopies |