RetrogeneDB ID:

retro_meug_1853

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold66232:8462..9249(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMEUG00000013232
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:ASB6
Ensembl ID:ENSMEUG00000007753
Aliases:None
Description:ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:17181]


Retrocopy-Parental alignment summary:






>retro_meug_1853
TTGGAGAGGGAGGCGCATTCCCCTTTTTACCAGGAAGGTGTGAGCTATTCCTTGCTGAAGATGGCAGAGCTGGGCTGACA
CATGAGGCTGACACCCTGTTGCAGAATGGAGCTAACCTCAACTTTGAAGATCCTGTCACTTACTACACTGCTCTGCACAT
TGCTGTCCTCCGAAATCAACTGACATGGTAGAGCTGCTGGTGCATCATGGGGCTGACATTAACAGAAGAGACCGGATCCA
TGAGAGCAGTCCCCTGGACTTGGCCAGTGAGGAACCTGAACGGCTGCCCTGCTTGCAACGACTTCTGGACCTTGGGGCTG
ATGTTAATGCAGCTGACAAGCATGGAAAGACAGCTTTGCTTCATGCGCTAGCCAGTAGCGATGGGGTCCAAATCCATAAC
ACTGAGAATATCCGGCTCTTGTTGGAAGGAGGAGCAAATGTAAAGGCCACCACCAAAGATGGTGACACAGTCTTTACATG
CATCATCTTCCTGCTTGGTGAAACAGTGGGAGGGGACAAAGAGGAAGCCCGTATGATCAACCGGTTCTGCTTCCGTGTCA
CTCAGCTGCTACTGGCTCATGGAGCAGACCCTAGTGAATGCCCACCCCATGAATCTCTCACTAATATCTGCCTCAAGAAC
TTTAAGCTACACTTTCCACTCTTGTGTTTCCTTCTGGAATCTGGAGTCTCCTACAATTGCTCCCTTCACGGCCCATCTTG
CTGGTCTGGCTTCCATATTATCTTTGAGAGACTCTGTTCCCACCCAGGCTGCCCTGAAGATGAAAGC

ORF - retro_meug_1853 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.49 %
Parental protein coverage: 82.7 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLEREAHSPFYQEGVSYSLLKMAELG-LTHAADTLLQNGANLNFEDPVTYYTALHIAVLRNQ-PDMVELLV
LEREAHSPFYQEGVSYSLLKMAELG.LTH.ADTLLQNGANLNFEDPVTYYTALHIAVLRNQ..DMVELLV
RetrocopyLEREAHSPFYQEGVSYSLLKMAELG<LTHEADTLLQNGANLNFEDPVTYYTALHIAVLRNQ<TDMVELLV
ParentalHHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENI
HHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENI
RetrocopyHHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENI
ParentalRLLLEGGANVKATTKDGDTVFTCIIFLLGETVGGDKEEARMINRFCFRVTQLLLAHGADPSECPPHESLT
RLLLEGGANVKATTKDGDTVFTCIIFLLGETVGGDKEEARMINRFCFRVTQLLLAHGADPSECPPHESLT
RetrocopyRLLLEGGANVKATTKDGDTVFTCIIFLLGETVGGDKEEARMINRFCFRVTQLLLAHGADPSECPPHESLT
ParentalNICLKNFKLHFPLLCFLLESGVSYNCSLHGPSCWSGFHIIFERLCSHPGCPEDES
NICLKNFKLHFPLLCFLLESGVSYNCSLHGPSCWSGFHIIFERLCSHPGCPEDES
RetrocopyNICLKNFKLHFPLLCFLLESGVSYNCSLHGPSCWSGFHIIFERLCSHPGCPEDES

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1853 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1853 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Macropus eugenii ENSMEUG00000007753 1 retrocopy
retro_meug_1853 ,
Procavia capensis ENSPCAG000000130862 retrocopies



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