RetrogeneDB ID: | retro_meug_1887 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold68945:6102..6732(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRTFDC1 | ||
Ensembl ID: | ENSMEUG00000000136 | ||
Aliases: | None | ||
Description: | phosphoribosyl transferase domain containing 1 [Source:HGNC Symbol;Acc:23333] |
Percent Identity: | 59.05 % |
Parental protein coverage: | 93.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VVISDGWPGYNLDLFTYPQHYYGDLNHVLIPHGVIMDRTEKLAKDIMNDIGYCDIMVLCMLKGGYKFCVD |
.VI.D..PGYNLDLF..P.HY..DL..V.IPHG.I.DRTE.LA.D.M...G......LC.LKGGYKF..D | |
Retrocopy | IVIEDNEPGYNLDLFCIPKHYAEDLEKVFIPHGLILDRTERLARDVMKEMGGHHMVALCVLKGGYKFFAD |
Parental | LVENLKNISRNSDTFVSMKVDFIRPKSYKNDQSLDDMQISGGDDFSELAGKNVLIVEDIVGSGRTMKSLL |
L....K...RNSD....M.VDF.R.KSY.NDQS..D....GGDD.S.L.GKNVLIVEDIV..G.TM..LL | |
Retrocopy | LLDYIKALNRNSDQSIPMTVDFVRLKSYCNDQSTGDIKVIGGDDLSALTGKNVLIVEDIVDTGKTMQTLL |
Parental | XXXXXXXXXXXXXXXLLVKRSPGSDGFQPDYIGFEIPDLFVVGYALHYNEYFQDLNHICVISEQGKVKYR |
...............LLVKR...S.G..PD..GFEIPD.FVVGYAL.YNEYF.DLNHICVISE.GK.KYR | |
Retrocopy | SLIKQHNPKMVKVASLLVKRTSRSMGYRPDFVGFEIPDKFVVGYALDYNEYFRDLNHICVISENGKEKYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000012241 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000136 | 3 retrocopies |
retro_meug_1887 , retro_meug_2035, retro_meug_295,
|
Ochotona princeps | ENSOPRG00000016040 | 2 retrocopies |