>retro_meug_1924
ATGGGTGAGCCCAGCCGTGAAGAGTATGAAATCCAGTCCTTTGATGCAGAGACCCAGAGGTTACTGAAGACTGCCCTCAA
AGAACCTGGTGCTGTGGATTTGGAGAAAGTGGCCAATGTGATTGTGGACCAATCCCTGAAAGACTGTATGTTCAGCAAGG
AAGCCGGACGCATTTGCTACACCATCATTCAGGCAGAGAGCAAGCAAGCCAGCCAGAGTGTCTTCCGTCGGGGCCTCCTC
AATCGGCTGCAGCAGGAGTACCAGGCCCGGGAGCAGCTCCGAGCCCGATCCCTGCAGGGCTGGGTCTGTTATGTTACCTT
CATCTGCAACATCTTTGACTACTTGAGGGTGAACAACATGCCTATGATGGCATTGGTCAATCCTGTCTATGACTGCCTTT
TTCGAATGGCACAGCCTGACAGCCTGCACAAGGAGGAGGAGGTGGACTGCCTGGTGTTACAACTGCATCGAATTGGAGA
ORF - retro_meug_1924 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.8 % |
Parental protein coverage: |
79.7 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MGEPGREEYEIQSFDAETQRLLKTALKEPGAVDLEKVANVIVDQSLKDCMFSKEAGRICYTIIQAESKQA |
| MGEP.REEYEIQSFDAETQRLLKTALKEPGAVDLEKVANVIVDQSLKDCMFSKEAGRICYTIIQAESKQA |
Retrocopy | MGEPSREEYEIQSFDAETQRLLKTALKEPGAVDLEKVANVIVDQSLKDCMFSKEAGRICYTIIQAESKQA |
|
Parental | NQSVFRRGLLNRLQQEYQPWEQLRAPSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRGTAQP |
| .QSVFRRGLLNRLQQEYQ..EQLRA.SLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFR..AQP |
Retrocopy | SQSVFRRGLLNRLQQEYQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFR-MAQP |
|
Parental | A-QGGGGGLPCYNCIELESSWR |
| ..Q...GG..........S.WR |
Retrocopy | D<QPAQGGGGGLPGVTTASNWR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1924 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1924 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.