RetrogeneDB ID: | retro_meug_1924 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold72617:5189..5668(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MIF4GD | ||
| Ensembl ID: | ENSMEUG00000005330 | ||
| Aliases: | None | ||
| Description: | MIF4G domain containing [Source:HGNC Symbol;Acc:24030] |
Retrocopy-Parental alignment summary:
>retro_meug_1924
ATGGGTGAGCCCAGCCGTGAAGAGTATGAAATCCAGTCCTTTGATGCAGAGACCCAGAGGTTACTGAAGACTGCCCTCAA
AGAACCTGGTGCTGTGGATTTGGAGAAAGTGGCCAATGTGATTGTGGACCAATCCCTGAAAGACTGTATGTTCAGCAAGG
AAGCCGGACGCATTTGCTACACCATCATTCAGGCAGAGAGCAAGCAAGCCAGCCAGAGTGTCTTCCGTCGGGGCCTCCTC
AATCGGCTGCAGCAGGAGTACCAGGCCCGGGAGCAGCTCCGAGCCCGATCCCTGCAGGGCTGGGTCTGTTATGTTACCTT
CATCTGCAACATCTTTGACTACTTGAGGGTGAACAACATGCCTATGATGGCATTGGTCAATCCTGTCTATGACTGCCTTT
TTCGAATGGCACAGCCTGACAGCCTGCACAAGGAGGAGGAGGTGGACTGCCTGGTGTTACAACTGCATCGAATTGGAGA
ORF - retro_meug_1924 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.8 % |
| Parental protein coverage: | 79.7 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MGEPGREEYEIQSFDAETQRLLKTALKEPGAVDLEKVANVIVDQSLKDCMFSKEAGRICYTIIQAESKQA |
| MGEP.REEYEIQSFDAETQRLLKTALKEPGAVDLEKVANVIVDQSLKDCMFSKEAGRICYTIIQAESKQA | |
| Retrocopy | MGEPSREEYEIQSFDAETQRLLKTALKEPGAVDLEKVANVIVDQSLKDCMFSKEAGRICYTIIQAESKQA |
| Parental | NQSVFRRGLLNRLQQEYQPWEQLRAPSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRGTAQP |
| .QSVFRRGLLNRLQQEYQ..EQLRA.SLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFR..AQP | |
| Retrocopy | SQSVFRRGLLNRLQQEYQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFR-MAQP |
| Parental | A-QGGGGGLPCYNCIELESSWR |
| ..Q...GG..........S.WR | |
| Retrocopy | D<QPAQGGGGGLPGVTTASNWR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1924 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1924 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000005330 | 1 retrocopy |
retro_meug_1924 ,
|