RetrogeneDB ID: | retro_meug_1928 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold72815:6628..6880(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | MYLPF | ||
| Ensembl ID: | ENSMEUG00000000482 | ||
| Aliases: | None | ||
| Description: | myosin light chain, phosphorylatable, fast skeletal muscle [Source:HGNC Symbol;Acc:29824] |
Retrocopy-Parental alignment summary:
>retro_meug_1928
AGAAGGGCAAAAGAGGGTGGCAGCTCCAATGTCTTCTCCATGTTTGACCAAACACAAATCCAGGAGTTTAAGGAAGCCTT
CACCATTGGCCAAAACCGAGATGGCATCATTGACAAGGAAGACCTAAGGGACACCTTTGCAGCTATGGGTCAACTGAATG
TGAAGAATGAGGAAATGGATGACCTGATGAAGGAGGCCAGTAGACCCATCAACTTTACTGTCTTCTTGACCATGTTTGGA
GAGAAATTTAAG
AGAAGGGCAAAAGAGGGTGGCAGCTCCAATGTCTTCTCCATGTTTGACCAAACACAAATCCAGGAGTTTAAGGAAGCCTT
CACCATTGGCCAAAACCGAGATGGCATCATTGACAAGGAAGACCTAAGGGACACCTTTGCAGCTATGGGTCAACTGAATG
TGAAGAATGAGGAAATGGATGACCTGATGAAGGAGGCCAGTAGACCCATCAACTTTACTGTCTTCTTGACCATGTTTGGA
GAGAAATTTAAG
ORF - retro_meug_1928 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.41 % |
| Parental protein coverage: | 50.3 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | RRAVEGGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEASGP |
| RRA.EGGSSNVFSMFDQTQIQEFKEAFT.I.QNRDGIIDKEDLRDTFAAMG.LNVKNEE.D..MKEAS.P | |
| Retrocopy | RRAKEGGSSNVFSMFDQTQIQEFKEAFT-IGQNRDGIIDKEDLRDTFAAMGQLNVKNEEMDDLMKEASRP |
| Parental | INFTVFLTMFGEKLK |
| INFTVFLTMFGEK.K | |
| Retrocopy | INFTVFLTMFGEKFK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1928 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1928 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000000482 | 1 retrocopy |
retro_meug_1928 ,
|
| Monodelphis domestica | ENSMODG00000001476 | 1 retrocopy |