RetrogeneDB ID: retro_meug_1968

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold75531:501..1435(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ADAM8
• Ensembl ID: ENSMEUG00000008579
• Aliases: None
• Description: ADAM metallopeptidase domain 8 [Source:HGNC Symbol;Acc:215]

Sequence

>retro_meug_1968
GGGAAACATGCCATCTACACGCAAGAAGATCTCAAGGAGAAACGTAGAACTTGTGGTGTCAGCAAGGTCAGCTTGAAGGG
AGAACTGGAGACAATGATGGCAGCTGTCGCTACGCCCAAGAACTGGATACCTGGATCCATCCCAAAGGACACCCACTATG
TGGAGCTCTTTGTGGTAGTGGACCACAGGGAGTATATGAAGTATAAAAGTCGAAAGAAGTTGAGGCATCGGGTGAAGGAG
ATCATCAATCACGTAGACAGGCTTTATCAGGAGATCAATTTCCGGGTAGTTCTAATTGGTTTGGAAATATGGGACAAAGA
GAACAAGGCAGTCATTGACTCAGACATAGAGTCTACCCTGTCGAGCTTTCTCAAGTGGCGGGACAGTGACCTCATCAAAA
AGAAGAAGCATGATAATGCCCAGCTGATCACAGGGGTGAGTTTTGGGACTGTTGTGGGCCTGGCCCAGACTGGCCTCCAT
GTGTACAGAAAGTTCAGGGGGTGTGAGCCATGACTATAGCAGAAACCCCTTTGGAGTGGCAACCACGTTGGCTCATGAAA
TGGGCCACAACCTGGGCATGGACCATGATGAAAACATCCTGGGCTGCCAGTGTGAGAGGAACAAGCAGGAAAACAGGTGC
ATCATGACCTCCATGTTCGGTGCCATCCTCCCCAAGAAGTTTAGCATCTGCAGCAAGTACAACCTGCAGAAGTTTCTTGA
GGGGGACATCTTCTCTTCAAGCTGCCTGAACAACTTCCCAGCCCTGGAGAAGCTGAAGCAAGGGCCTGTGTGTGGGAACA
AGTTTTTGGAAAGGGGGGAGGAGTGCGATTGTGGTCTTCCTGAGGAGTGTCAGAACCAGTGCTGTAACCCCAAGAGCTGC
AAGCTGGTCCCAGGGGCTGAGTGCACCGAGGGGATGTGCTGCCAGGCATGCCAG

Alignment

ORF - retro_meug_1968 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.42 %
• Parental protein coverage: 51.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GGHAVYRAEHLVQKLVTCGVSNATLEEDLEPRMAAAQKPWNWKSGP-DQETRYVELFVVVDYTEYVSFRS
          G.HA.Y..E.L..K..TCGVS...L...LE..MAA...P.NW..G.....T.YVELFVVVD..EY....S
Retrocopy GKHAIYTQEDLKEKRRTCGVSKVSLKGELETMMAAVATPKNWIPGSIPKDTHYVELFVVVDHREYMKYKS

Parental  REDIRSRVKEIVNHVD-LYQELNFRVVLIGLEIWDRGDKAQISSNPDSTLDNFLRWRSQELVPRKKHDNA
          R...R.RVKEI.NHVD.LYQE.NFRVVLIGLEIWD...KA.I.S...STL..FL.WR...L...KKHDNA
Retrocopy RKKLRHRVKEIINHVDRLYQEINFRVVLIGLEIWDKENKAVIDSDIESTLSSFLKWRDSDLIKKKKHDNA

Parental  QLITGVDFEKTTVGLA-RVASMCTTGSGAVNQDHHVNPIGVASTIAHEMGHNLGMDHDENIAGCYCHEQK
          QLITGV.F..T.VGLA.R.ASMCT..SG.V..D...NP.GVA.T.AHEMGHNLGMDHDENI.GC.C...K
Retrocopy QLITGVSFG-TVVGLA>RLASMCTESSGGVSHDYSRNPFGVATTLAHEMGHNLGMDHDENILGCQCERNK

Parental  QNGGCIMAASISTVFPKTFSSCSRNNLENFLE--ITQTSCLTNFPKLDEIYGGPVCGNRFVEHGEECDCG
          Q...CIM........PK.FS.CS..NL..FLE..I...SCL.NFP.L.....GPVCGN.F.E.GEECDCG
Retrocopy QENRCIMTSMFGAILPKKFSICSKYNLQKFLEGDIFSSSCLNNFPALEKLKQGPVCGNKFLERGEECDCG

Parental  SPEECTNHCCNATTCRLVMGATCAHGECCHKCQ
          .PEEC.N.CCN...C.LV.GA.C..G.CC..CQ
Retrocopy LPEECQNQCCNPKSCKLVPGAECTEGMCCQACQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1968 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1968 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008579	1 retrocopy	retro_meug_1968 ,