RetrogeneDB ID: retro_meug_1974

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold75816:9..591(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000011259
• Aliases: None
• Description: None

Sequence

>retro_meug_1974
ATGACCGACAAGTCCTTCTTCGACACCGATGTCAACACCCTGACCTGATTCGTCATGGAGGAAGGGAGGAAAGCCAAAGG
CACCGGAGAGATGACCCAGTTGCTTAACAGCCTCTGCACCGCTGTCAAAGCCATGTCCTCTGCGGTGCGGAAAGCAGGCA
TAGCCAATCTGCATGGAATTGCTGGCTCTACCAATGTCACTGGTGACCAAGTCAAGAAGCTGGATGTTCTCTCCAATGAC
TTGGTTGTTAACATGCTAAAGTCATCCTTTGCTACATGTGTTCTTGTATCAGAAGAAAACAAGAATGCCATAATAATAGA
GTCGGAAAAAAGGGGTAAATATGTGGTCTGTTTTGATCCTCTGGATGGTTCTTCGAACATTGACAGCCTTGCATCCATTG
GAACTATTTTTGGCATTTACAGAAGGAATTCAACTGGTGAGCCTTCTGAGAAGGATGCTTTGCAGCCTGGCAGGAATCTA
GTGGCTGCTGGGTATGCTCTCTATGGCAGTGCCACAATGTTAGTGCTGGCTATGGAATGTGGAGTCAACTGCTTTATGCT
GGACCCGGCTTATGGGGAGTTT

Alignment

ORF - retro_meug_1974 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.85 %
• Parental protein coverage: 57.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTDKSFFDTDVNTLTRFVMEEGRKAKGTGEMTQLLNSLCTAVKAISSAVRKAGIANLYGIAGSTNVTGDQ
          MTDKSFFDTDVNTLT.FVMEEGRKAKGTGEMTQLLNSLCTAVKA.SSAVRKAGIANL.GIAGSTNVTGDQ
Retrocopy MTDKSFFDTDVNTLT*FVMEEGRKAKGTGEMTQLLNSLCTAVKAMSSAVRKAGIANLHGIAGSTNVTGDQ

Parental  VKKLDVLSNDLVVNMLKSSFATCVLVSEENKNAIIIEPEKRGKYVVCFDPLDGSSNIDCLASIGTIFGIY
          VKKLDVLSNDLVVNMLKSSFATCVLVSEENKNAIIIE.EKRGKYVVCFDPLDGSSNID.LASIGTIFGIY
Retrocopy VKKLDVLSNDLVVNMLKSSFATCVLVSEENKNAIIIESEKRGKYVVCFDPLDGSSNIDSLASIGTIFGIY

Parental  RKNSIGEPSEKDALQPGRNLVAAGYTLYGGATMLVLAMECGVNCFMLDPAIGEF
          R.NS.GEPSEKDALQPGRNLVAAGY.LYG.ATMLVLAMECGVNCFMLDPA.GEF
Retrocopy RRNSTGEPSEKDALQPGRNLVAAGYALYGSATMLVLAMECGVNCFMLDPAYGEF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1974 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1974 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000011259	2 retrocopies	retro_meug_1438, retro_meug_1974 ,
Sarcophilus harrisii	ENSSHAG00000009438	1 retrocopy	retro_shar_37,