RetrogeneDB ID: retro_meug_2005

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold78727:9054..10349(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006291
• Aliases: None
• Description: None

Sequence

>retro_meug_2005
TCTGAAATTGAGAGTTACCTGGAGAAGGAGTATTAGATGCTTCTTCAAGAGGATTGGATATCTAAGTGCAAGGAGATAAC
GGAGTCTTACCTACCAGTTATCATCAATGCAATCAGAGGGGAAATGAGCAATCCTGAGGAGGTGTGCTGAGCTCTCATGT
TTTGCTGGTCCCTTCAGAAACATCTGACTACTCCAAGTCAACAACAGAAGGAACTGGAATCCAACTCCATCCCTGAAGTG
GACATGTCCAAAGTGGTGGCTCCCTTTATGGCCAATGTTCCCCTGCTCCTTTGTCCTCAGGGAGAGACCCAGAAAAATCC
AGCTCAGCCAAAGGTCAGAGAGGATGTGTGCCAAGACTGTGTCCAGTTAGTGACAGATGCTCAGAATGCTATAAAGACCA
ACTCCAGCTTCATCGAATCCTTGGTGAATCATCTCAAGGAAGAGTGTGATTGCCTTGGGCCTGGTGTATCAGACATGTGC
AAGACCTAGATCAGTCAATATTCTGATATTACTGTCCAATTGATGAGGCACATGTCCAAGGAGATCTGTGGGTATGCTCG
GTTCTGTGCAGAGAAGGAGATGCCTCTGTACTCCCTGGTCCCAGCTCGTGCAGCTGCCACCAAAGTGCTCCCTGCGCTGA
AGTTGGTGGAGCCAGTCAAGAAGAATGTGGTTCAGACAAAGGCTGAAGCACTTTCGAGCTGTGCCAGTATGTTATCAAAG
AGATCATCAAATTGCTGGAGGGCAACAAGACTAAGGAGGATAGGATTCATGCAGTTGAAAAAGTGTGCTCCGTGATCTTC
AAGTCCATGACTGAGGAATGCTGAGACCTGGTGGAGTCTTGTGGTCCAATCGTTGTGGATCTGCTTCTTGACGAGACAAG
GCTACACTTGGTTTGCATCTTACTTAACCTTTGTCAAAGCAAAAAGTCAGTTAACATGGCCAGGCTTAAGAGTGGTGTCT
TCAGTGAGATGTGTGAAAATGTCGATGAGTATTTGGACTGGAACCTGGATAAGAACAGCACGAAGGCCATGATCCTCTCT
GCCTTTAAGAAGGCTTGTAGCATGTTGCCAGGAATTTACAAGGATGAGTGTGATGAGTTTGTGGAACAGTATGAGCCTAT
CCTGATAGCAGCCCTGAATGATGAGATGAATCCTGATTCTCTGTATCTGAAAATCAGAGCTTGTCCCAAAGCTTCTCCTA
AGTCTCTATTGGGAACTGGTGTTCAAGCTGCTGGTGTAAGAACATGGAGACAGTCGCTCAGTGCAACACTGTTGAGCATT
GCAAGTGCCACATGT

Alignment

ORF - retro_meug_2005 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.35 %
• Parental protein coverage: 85.71 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AEIESFLERECEMLPQEDWVSKCKEIIESYLPVIINAIEGEMSDPEEVCGALMFCRSLQKHLATLSLHQK
          .EIES.LE.E..ML.QEDW.SKCKEI.ESYLPVIINAI.GEMS.PEEVC.ALMFC.SLQKHL.T.S..QK
Retrocopy SEIESYLEKEY*MLLQEDWISKCKEITESYLPVIINAIRGEMSNPEEVC*ALMFCWSLQKHLTTPSQQQK

Parental  ELESNSIPEGDMSEVVAPFMANVPLLLYPQGETQKKPPPPKAGEDVCQDCVKLVTDVQNAVKTNSSFVVS
          ELESNSIPE.DMS.VVAPFMANVPLLL.PQGETQK.P..PK..EDVCQDCV.LVTD.QNA.KTNSSF..S
Retrocopy ELESNSIPEVDMSKVVAPFMANVPLLLCPQGETQKNPAQPKVREDVCQDCVQLVTDAQNAIKTNSSFIES

Parental  LVDHLREECDRLGPGVSDMCKAYISQYSDIAVQVMMHMQPKDICEYAGFCAGKKMPLQALVPAHVAATKV
          LV.HL.EECD.LGPGVSDMCK..ISQYSDI.VQ.M.HM..K.IC.YA.FCA.K.MPL..LVPA..AATKV
Retrocopy LVNHLKEECDCLGPGVSDMCKT*ISQYSDITVQLMRHMS-KEICGYARFCAEKEMPLYSLVPARAAATKV

Parental  IPALELVEPVKQNLVQIKAGP-TCELCQYIIKEIIKLLEGKKTKEDVVKAAEEVCSVIPSYLVGSCQDLV
          .PAL.LVEPVK.N.VQ.KA...T.ELCQY.IKEIIKLLEG.KTKED...A.E.VCSVI.......C.DLV
Retrocopy LPALKLVEPVKKNVVQTKAEA<TFELCQYVIKEIIKLLEGNKTKEDRIHAVEKVCSVIFKSMTEEC*DLV

Parental  DTFGVSIMHFLLKEIDPDSICSTLNICQNK-SINVARLKSGIFCEMCKKFDGYLDQNLDKNSMKAMILAA
          ...G......LL.E......C..LN.CQ.K.S.N.ARLKSG.F.EMC...D.YLD.NLDKNS.KAMIL.A
Retrocopy ESCGPIVVDLLLDETRLHLVCILLNLCQSKKSVNMARLKSGVFSEMCENVDEYLDWNLDKNSTKAMILSA

Parental  FEKACSMLPEIYKDECDEFVEQYEPVLIAALHDEMNPDSLCLKIKACPKASPKPLLGTEQCVWGPSYWCK
          F.KACSMLP.IYKDECDEFVEQYEP.LIAAL.DEMNPDSL.LKI.ACPKASPK.LLGT.....G...W..
Retrocopy FKKACSMLPGIYKDECDEFVEQYEPILIAALNDEMNPDSLYLKIRACPKASPKSLLGTGVQAAGVRTWRQ

Parental  NMETAAQCHAVEHC
          .........A...C
Retrocopy SLSATLLSIASATC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2005 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2005 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006291	1 retrocopy	retro_meug_2005 ,