RetrogeneDB ID: | retro_meug_2016 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold79821:5631..6244(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OCIAD1 | ||
Ensembl ID: | ENSMEUG00000010655 | ||
Aliases: | None | ||
Description: | OCIA domain containing 1 [Source:HGNC Symbol;Acc:16074] |
Percent Identity: | 58.37 % |
Parental protein coverage: | 90.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | RRVFAECNRESFWYRXXXXXXXXXXXXXXXXXXXILSSHPKYDSVPKLVFACVMGYFAGKISYV-KTCQE |
RRVFAEC..ESFWYR...................ILS.HPKYDS.PKLVF..V.GYF.GKISY......E | |
Retrocopy | RRVFAECKPESFWYRSVPFFATSMFVTQRFIAKGILSGHPKYDSAPKLVFPYVTGYFDGKISYI<NYLPE |
Parental | KFKWLENSPLG-EALRLGQGCQ-ASPGYFSQKSGFESKITEHLS-FGTSPTSESRKK---LPPYEPIPFS |
KFK.LENSPLG..AL.LGQ....ASPGYFS.K.G..SKI.E..S.FG.S.TSE...K....PP.EPIPF. | |
Retrocopy | KFKQLENSPLG<KALHLGQERRFASPGYFSHKPGSDSKISEDSS<FGASLTSERSAKEGPIPPSEPIPFI |
Parental | ASMNESXXXXXXXXXXXXPDTTVEESPKR-KVVTYEELRNKNRETYEVTLSQKGDTPLRSVQERTPKKQ |
ASMNES.............DTTVEESPKR.K..TYEEL.N.NRE.Y.VTLSQK.DT.L.S.QE.T.K.Q | |
Retrocopy | ASMNESTPPGITDYKTQGCDTTVEESPKR>KLLTYEELKNENREIYKVTLSQKSDTTLKSMQETTLKTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000011863 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005961 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000014002 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010655 | 2 retrocopies |
retro_meug_1692, retro_meug_2016 ,
|
Monodelphis domestica | ENSMODG00000020640 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018132 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014963 | 1 retrocopy |