RetrogeneDB ID: | retro_meug_2028 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold81563:7148..8057(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AHCYL1 | ||
| Ensembl ID: | ENSMEUG00000012519 | ||
| Aliases: | None | ||
| Description: | adenosylhomocysteinase-like 1 [Source:HGNC Symbol;Acc:344] |
Retrocopy-Parental alignment summary:
>retro_meug_2028
GTCGCTGACATCAGCCTGGCTGCCTGGGGACGCAAGGCCCTGGACAGAGCAGAGAATGAGATGCCTGGCCTGATGAAACT
TCGAGAGATGTACTCAGCCTCCAAGCTACTGAAGGGTGCCCAGATTGCTGGCTGCCTTCACATGACTGTGGAAACAGCTG
TTCTTATTGAGACACTGGTGGCCCTGGGAACTGAGGTACAGTGGTCCAGTTGCAATATTTTCTCTACCCAGGACCATGCA
GCAGCTGCCACTGCCAAAACTGGCATTCCTGTATACGCTTGGAAGGGGGAGACTGATGAGGAATACCTCTGGTGCATTGA
GCAGACCCTCTATTTCAAGGATGGGCAGCCCCTCAACATGATCCTGGACGATGGTGGGGACCTTACCAACCTCGTTCACA
CCAAATACCCTGAGCTCCTGAAGGGTATCAGAGGCATCTCAGAGGAAACCACCACAGGAATCCATAGTCTATACAAGATG
AAACTCAATGGAGTTCTGAAAGTGCCAGCTATCAATGTGAATGATTCTGTTACCAAGGGCAAGTTTGACAACCTGTGTGG
CTGCCGTGAGTCCCTCATTGATGGCATCAAATGAGCCACAGATGTGATGATTGTAGGCAAGGTGACTGTGGTGGCAGGCT
ATGGTGATGTGGGCAAGGGCTGTGCTCAGGCCCTTCTGGGCTTTCGTGCCCGAGTCATCATCACAGAGATAGACCCCATC
AGTGCACTGCAGGCCTCTGTGGAGGGCTATCAGGTGACTCCCATGGATGAGGCCTGCAAAGAGGGAAACATCTTTGTCAC
CACCACAGGATGCGTGGACATCATCTTGGGCAGGCACTTTGAGCAGATGAAGGACGACGCCATAGTATATAACATTGGCC
ACTTTGACGTGGAAATAGATGTAAAATCA
ORF - retro_meug_2028 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.82 % |
| Parental protein coverage: | 56.77 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VKNIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAVLIETLCALGAQCRWSA |
| V..I..A..GR.....AE..M..L..LR......K.L.GA.I.GC.H.T..TAVLIETL.ALG....WS. | |
| Retrocopy | VADISLAAWGRKALDRAENEMPGLMKLREMYSASKLLKGAQIAGCLHMTVETAVLIETLVALGTEVQWSS |
| Parental | CNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRCVNM-DGWQANMILDDGGDLTHWVYKKYPNVF |
| CNI.STQ...AAA.A..G..V.AWKGE......WCI.......DG...NMILDDGGDLT..V..KYP... | |
| Retrocopy | CNIFSTQDHAAAATAKTGIPVYAWKGETDEEYLWCIEQTLYFKDGQPLNMILDDGGDLTNLVHTKYPELL |
| Parental | KKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV |
| K.IRGI.EE..TG.H.LY.....G.L.VPA.NVNDSVTK.KFDNL..CRES..DG.K..TDVM..GK..V | |
| Retrocopy | KGIRGISEETTTGIHSLYKMKLNGVLKVPAINVNDSVTKGKFDNLCGCRESLIDGIK*ATDVMIVGKVTV |
| Parental | VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHL |
| V.GYG.VGKGC..AL....A.V.ITEIDPI.ALQA...G..V....E.........T.TG........H. | |
| Retrocopy | VAGYGDVGKGCAQALLGFRARVIITEIDPISALQASVEGYQVTPMDEACKEGNIFVTTTGCVDIILGRHF |
| Parental | DRMKNSCIVCNMGHSNTEIDVTS |
| ..MK...IV.N.GH...EIDV.S | |
| Retrocopy | EQMKDDAIVYNIGHFDVEIDVKS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2028 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2028 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000012519 | 1 retrocopy |
retro_meug_2028 ,
|
| Ochotona princeps | ENSOPRG00000004009 | 1 retrocopy |