RetrogeneDB ID:

retro_meug_2041

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold82759:243..635(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CDA
Ensembl ID:ENSMEUG00000016075
Aliases:None
Description:cytidine deaminase [Source:HGNC Symbol;Acc:1712]


Retrocopy-Parental alignment summary:






>retro_meug_2041
CCAATTAAGATGAAGCAGCTCATTTGCCGGAGTCAAGAGGCCAAGGAGTTTGCCTACTGTCCCTACAGTAACTTCCCAGT
GAGATCAGCTCTTCTGACTCTGAATGGGAAGATTTTTTTTCAGATGCAATTTAGGAAATGCTGCCTACCCACTAGGCATA
TGGATAGAATGCACTGCCATTCAGAAGGCCATGTCAGAAGGACACAAAGAGTTCTGGGCCATTGCTATTACCAGTAATTT
GGAGAATGACTTTATCCCACTATCTGGAGCCTGTAGACAAGTAATGAGAGAGGTTCAAAAACATTGGCCTGTCTACATGA
CAAAAAGCAGATGGTACATATGATGTCAGGATGGTCCATGAATCATTTGAACCAGATGACCTGCAGAAGTCC

ORF - retro_meug_2041 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.85 %
Parental protein coverage: 91.16 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalPKNQQQLICKGQEAKEFAYCPYSNFPVGAALLTLDGKIFSG-CNVENAAYPVGTCAERTAIQKAISEGHK
P....QLIC..QEAKEFAYCPYSNFPV..ALLTL.GK.....CN..NAAYP.G...E.TAIQKA.SEGHK
RetrocopyPIKMKQLICRSQEAKEFAYCPYSNFPVRSALLTLNGKXXXQ>CNLGNAAYPLGIWIECTAIQKAMSEGHK
ParentalQFRAIAITSNTENNFIIPFGACRQVMREFGKHWYVYMT-KADGTYEVKMVHELLPASFGPDDLQKN
.F.AIAITSN.EN.FI...GACRQVMRE..KHW.VYMT.KADGTY.V.MVHE....SF.PDDLQK.
RetrocopyEFWAIAITSNLENDFIPLSGACRQVMREVQKHWPVYMT>KADGTYDVRMVHE----SFEPDDLQKS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2041 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2041 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Dipodomys ordii ENSDORG000000119001 retrocopy
Macropus eugenii ENSMEUG00000016075 6 retrocopies
Ochotona princeps ENSOPRG000000073642 retrocopies



Copyright © RetrogeneDB 2014-2017