RetrogeneDB ID: retro_meug_2056

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold85122:0..977(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GLDC
• Ensembl ID: ENSMEUG00000001734
• Aliases: None
• Description: glycine dehydrogenase (decarboxylating) [Source:HGNC Symbol;Acc:4313]

Sequence

>retro_meug_2056
AAGTCTGCACATGGCACCAACCCTGCAAGTGCCCATATGGCAGGGATGAAGATTCAGCCAGTGGAGGTGGACAAAAATGG
AAGTATTGACCTTTGTGCATCTTAGAGCTGTGGTAGATAAATTTAAAGAAAACTTGGCAGCCATCATGGTCACTTACCCA
TCTACCAATGGGGTATTAGAGGAGAATATCAGTGATGTATGTGACCTCATCCACCAACATGGAGGCCAGGTTGATCTGGA
TGGAGCAAACATGAATGCACAGGTGGGACTCTGCCGTCCAGGAGACTTTGGCTCTGATGTCTCACATTTAAATCTTCACA
AGACGTTCTGCATTTCCCATAGTTGCAGTGGGCCTGGAATGGGGCCTATTGATATGAAGAAACATCTTGCTCCTTTTCTA
CCAAACCGTCCAGTCATCCCAATAAAGTTGGATAAAGATGGACATTCCTTGGGTACTGTCAGCTCTGCTCCCTGGGGTCA
GTGCCATTTTGCCAATTGCTTGGGCATATATTAACATGATGGGAAGCAGAGGTCTCAAACATGCCAGGGAAATCGCTATA
CTAAATGCTAACTATATGGCCAAGCGATTGGAAAAGCATTATAAAGTCCTTTTTAGGAGTGTAAGAGGCTATGTGGCTCA
TGAGTTTATTTTGGATACAAGACCCTTCAAAAAATCTGCAGATATTGAAGCTGTGGATATTGCCAAGAGGCTTCAAGATT
ATGGATTCCATGCTCCCACTATGTCATGGCCAGTGGTCAGGACACTTATGACTGAGCCCACAGAGTCTGAAGATAAGGCT
GAGTTGGACAGGTTTTGTGATGCCATGATCAGTATCCGTCAAGAAATTGTTGACATAGAAAAAGGTCGCATGGACTCAAG
GGTTAACTCACTGAAGATGTCTCCATATTCCTTGACTTGTATTATCTCCTCAAACTGGGATCGGCCTTATTCCAGAGAAG
TAGCAGCTTTCCCAATA

Alignment

ORF - retro_meug_2056 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.15 %
• Parental protein coverage: 57.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KSAHGTNPASAHMAGMKIQPVEVDKNGSIDL-VHLRAMVDKYKENLAAIMITYPSTNGVFEENISDVCDL
          KSAHGTNPASAHMAGMKIQPVEVDKNGSIDL.VHLRA.VDK.KENLAAIM.TYPSTNGV.EENISDVCDL
Retrocopy KSAHGTNPASAHMAGMKIQPVEVDKNGSIDL>VHLRAVVDKFKENLAAIMVTYPSTNGVLEENISDVCDL

Parental  IHQHGGQVYLDGANMNAQVGLCRPGDFGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVI
          IHQHGGQV.LDGANMNAQVGLCRPGDFGSDVSHLNLHKTFCI.H...GPGMGPI..KKHLAPFLP..PVI
Retrocopy IHQHGGQVDLDGANMNAQVGLCRPGDFGSDVSHLNLHKTFCISHSCSGPGMGPIDMKKHLAPFLPNRPVI

Parental  PIKLDKDGHSLGTVSAAPW-GS-SAILPISWAYIKMMGGRGLKHATEIAILNANYMAKRLEKHYSLF---
          PIKLDKDGHSLGTVS.APW.GS.SAILPI.WAYI.MMG.RGLKHA.EIAILNANYMAKRLEKHY......
Retrocopy PIKLDKDGHSLGTVSSAPW<GS<SAILPIAWAYINMMGSRGLKHAREIAILNANYMAKRLEKHYKVLFRS

Parental  -RGYVAHEFILDTRPFKKSANIEAVDVAKRLQDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDAMI
          .RGYVAHEFILDTRPFKKSA.IEAVD.AKRLQDYGFHAPTMSWPV..TLM.EPTESEDKAELDRFCDAMI
Retrocopy VRGYVAHEFILDTRPFKKSADIEAVDIAKRLQDYGFHAPTMSWPVVRTLMTEPTESEDKAELDRFCDAMI

Parental  SIRQEIADIEEGRMDSRVNPLKMSPHSLTCITSSNWDRPYSREVAAFPL
          SIRQEI.DIE.GRMDSRVN.LKMSP.SLTCI.SSNWDRPYSREVAAFP.
Retrocopy SIRQEIVDIEKGRMDSRVNSLKMSPYSLTCIISSNWDRPYSREVAAFPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2056 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2056 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000178445	1 retrocopy	retro_hsap_2932,
Gorilla gorilla	ENSGGOG00000004507	1 retrocopy	retro_ggor_2034,
Macropus eugenii	ENSMEUG00000001734	1 retrocopy	retro_meug_2056 ,
Pongo abelii	ENSPPYG00000019225	1 retrocopy	retro_pabe_2521,
Pan troglodytes	ENSPTRG00000029347	1 retrocopy	retro_ptro_2060,