RetrogeneDB ID: retro_meug_26

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold109248:6528..7254(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000003757
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007169
• Aliases: None
• Description: None

Sequence

>retro_meug_26
ATGGCGGTCCGAGCCTCCTTCGAGAACAACTGCGAGATCGGCTGCTTCGCCAAACTCACCAACACCTACTGCCTGGTGGC
CATCGGCGGCTCGGAGAACTTCTACAGTGTGTTTGAGGGAGAACTTTCAGAGACCATTCCAGTGGTGCACGCGTCCATCG
CCGGCTGCAGGATCATTGGTCGCATGTGTGTAGGAAACCGACATGGCCTTCTTGTGCCCAACAACACTACAGACCAGGAG
CTACAGCACATCCGAAACAGTCTCCCTGACTCAGTGCAGATTCGACGGGTAGAGGAGCGACTCTCAGCACTGGGCAACGT
TACCACCTGTAATGACTACGTAGCTCTTGTTCACCCAGACCTGGACAGGGAGACAGAAGAAATTCTAGCTGATGTACTCA
AGGTTGAAGTCTTCAGACAGACAGTGGCTGACCAGGTGCTGGTGGGAAGCTACTGTGTTTTCAGCAATCAGGGAGGGTTA
GTGCACCCAAAGACTTCCATTGAGGACCAAGATGAATTGTCCTCTCTTCTCCAGGTTCCACTGGTGGCTGGTACTGTGAA
TCGAGGAAGCGAAGTGATTGCAGCTGGAATGGTAGTCAACGACTGGTGTGCTTTCTGTGGTCTGGACACAACTAGCACAG
AGCTGTCAGTAGTAGAGAGTGTCTTCAAGCTTAATGAAGCCCGACCCAGCACCATTGCCACCAAGATGCGAGATTCCCTC
ATCGAC

Alignment

ORF - retro_meug_26 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETIPVVHASIAGCRIIGRMCVGNRHGL
          MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETIPVVHASIAGCRIIGRMCVGNRHGL
Retrocopy MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETIPVVHASIAGCRIIGRMCVGNRHGL

Parental  LVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQ
          LVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQ
Retrocopy LVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQ

Parental  TVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLV
          TVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLV
Retrocopy TVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_26 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_26 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007169	1 retrocopy	retro_meug_26 ,
Monodelphis domestica	ENSMODG00000019689	1 retrocopy	retro_mdom_1926,
Mus musculus	ENSMUSG00000027613	1 retrocopy	retro_mmus_2569,
Oryctolagus cuniculus	ENSOCUG00000010588	1 retrocopy	retro_ocun_1935,
Rattus norvegicus	ENSRNOG00000049497	1 retrocopy	retro_rnor_1067,