RetrogeneDB ID: retro_meug_280

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_9264:33375..33867(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCS
• Ensembl ID: ENSMEUG00000000990
• Aliases: None
• Description: copper chaperone for superoxide dismutase [Source:HGNC Symbol;Acc:1613]

Sequence

>retro_meug_280
CAATGCTGCCTCATCAAAGGGACTGTTGATGGCCTGGAGCTTGGACCCCATGGCCTTCATGTCCATCAGTATGGGCACTT
GACCCAAAACTGTGCTAGCTGTGGAGATCACTTCAACCCTAATGGAATGCCCCATGGTGGCTCCAAGGACACCCACCGGC
ACCTGGGAGATCTGGGGAACATCTATGTCAATGCTGATGGGAAAGCCACCTTCAGGATGGAGGATGAGAGGCTCAAGGTG
TGGGACATCATTGGCCGAAGCCTGGTCATCGATGCTGGGGAAGATAACTTGGGTCAGGGAGGACACCCACTCTCCAAGGT
CACTGGAAATTCTGGAGAGAGGCTAGCCTGTGGTATCATTGCTCTCTCAGGCGGCCTCTTCCAGAACCCCAAGCAGGTCT
GCTCCTGTGATTGTCTCACCATCTGGGAAGAGAGGGGGCGGCCCCTCGCTGGGGAGGGGCGAAGGAAGCCTGCGCAGACC
CCTGCTTACCTT

Alignment

ORF - retro_meug_280 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.02 %
• Parental protein coverage: 62.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QSCLIEGTIDGLEPGPHGLHVHQYGDLTQNCASCGDHFNPDGMPHGGPKDTHRHLGDLGNIYANADGRAT
          Q.CLI.GT.DGLE.GPHGLHVHQYG.LTQNCASCGDHFNP.GMPHGG.KDTHRHLGDLGNIY.NADG.AT
Retrocopy QCCLIKGTVDGLELGPHGLHVHQYGHLTQNCASCGDHFNPNGMPHGGSKDTHRHLGDLGNIYVNADGKAT

Parental  FRMEDERLKVWDIIGRSLVVDAGEDDLGQGGHPLSKVTGNSGERLACGIIARSAGLFQNPKQICSCDGLT
          FRMEDERLKVWDIIGRSLV.DAGED.LGQGGHPLSKVTGNSGERLACGIIA.S.GLFQNPKQ.CSCD.LT
Retrocopy FRMEDERLKVWDIIGRSLVIDAGEDNLGQGGHPLSKVTGNSGERLACGIIALSGGLFQNPKQVCSCDCLT

Parental  IWEERGRPLAGEGRKKPPQTPAHL
          IWEERGRPLAGEGR.KP.QTPA.L
Retrocopy IWEERGRPLAGEGRRKPAQTPAYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_280 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_280 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000000990	1 retrocopy	retro_meug_280 ,