RetrogeneDB ID: retro_meug_306

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold100245:5235..5646(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RELL1
• Ensembl ID: ENSMEUG00000004242
• Aliases: None
• Description: RELT-like 1 [Source:HGNC Symbol;Acc:27379]

Sequence

>retro_meug_306
GGAATGGACACCCATGTCGCCATTATACTAGTTCCAGTTTTCTTCATCATGGGACTTTTTGGAGTCTTTACTTTCCATCT
GCATAAGAAGAAGGCTATCAGTGTACAGCAGAAGCTAAACAAGATATTGAGGAAAAAGTTGAAAAGATATAATTGAATGG
CAGCAAACACAAGAATAGTGATACTAGTGAACAAACTGTCCATTTACATCATGAAAAATGAAGCAAATGCTGATGTTTCA
AAGGCCATGATGGAAGACAATAGCATCTGGGATCCTGAAAGCCCTTTGACTTCTAGCACTCCAGGCAGTCCTCCAATGAA
TGCTAGTACCTTGTCACCAGGAGGTACTCCACAAAAGCATATATGTAGCTACCATCTACATACTGTTTGAGGGGCAGTAG
AAAGATATGTT

Alignment

ORF - retro_meug_306 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.5 %
• Parental protein coverage: 59.05 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GHPEYVAIVLVPVFFIMGLFGVFICHLLKKK-GYRCTTEAEQDIAEKVEKIELNDSMNENSDTVGQIVH-
          G....VAI.LVPVFFIMGLFGVF..HL.KKK.GY.CT.EA.QDI.EKVEKI.LN.S...NSDT..Q.VH.
Retrocopy GMDTHVAIILVPVFFIMGLFGVFTFHLHKKK<GYQCTAEAKQDIEEKVEKI*LNGSKHKNSDTSEQTVH>

Parental  YIMKNEANADVLKAMVADNSVCEPESPLTPSTPGSPPVSPGPMSPGGTPGKHVCGHHLHTVGGAVERDV
          YIMKNEANADV.KAM..DNS...PESPLT.STPGSPP......SPGGTP.KH.C..HLHTV.GAVER.V
Retrocopy YIMKNEANADVSKAMMEDNSIWDPESPLTSSTPGSPPMNASTLSPGGTPQKHICSYHLHTV*GAVERYV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_306 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_306 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004242	1 retrocopy	retro_meug_306 ,