RetrogeneDB ID: retro_meug_32

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold7407:30032..31103(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000008916
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000000128
• Aliases: None
• Description: None

Sequence

>retro_meug_32
CTCAGGGATATTTCTGTTAATGAGCAGGGTGACGTCCCGCCCTGGAATACCACCAGCAACCAGAATCCTTTCACAGTTCG
CGTGTATGAACGAGTTGGGGAGAATGCAAAGAAACTTCCCGTCCCTAAAACGGTGGAGCCTGAGGATGATGCGCTGGGTT
ACAAGGCAGCTGTTTTGCTGTCAGAAACAAAAAAACCTTTGGTGCCCCCTGATTATCCAATGGACAGTCGTTTTGGATCT
CCCCTTCCTATGGACATGTCTGTGGCCCTGGAACCAGAAGCAAAGCCACCAGATGTCAACGAAGTCCCTGACTACCATGA
GGACATCTATGTGTACCTGAGGGAAATGGAGGTTCAGTATAAGCTTAAAGTGGGGTACATAAAGCAGCCAGACCTAACCG
ACAGCATGCGGGCTATGTTGGTGGACTGGCTGGTGATGGTAGAGCAGGAAACTGACCTTCACAACGAGACTCTGCACTTG
GCTGTGAACTACATGGATAGATTCCTCTCCTCAGCAGTGTTCCAGGGGAAGCTTCAGCTGCTTGGGACCGCTGCCCTGCT
CCTCGCCTCCAAGTTTGAGGAAATCCACCCCCCGACAATGGCCAGGTTTCTGTCCCTCACAGATGAGGTGTATACTAAAA
GGGAGGTGTTGAGAATGGAGCAGCTGTTGCTGAAAGTGCTTGATTTTGACCTTGCAGCACCAACAATCCACCAGTTTCTC
ACCCAGTATTTCCTGCATCAGCAGCCAGCCAATTCTAGAGTGGAAAGTTTAGCGATGTTTCTGGGAGAGTTGAGTTTAAT
TGATACTGACCTATACCAGAAATATTTACCATCAACTATCTCCGGAGCTGCCTTTCATATAGCACTCTACACCATCACTG
GGAAAAGTTGGCCAGAGTCTTTAATCCAAAAAACAGGATACACCCTGGAAAGTCTTAAGCCATGCCTAATTGCCCTTCAC
CAGACCTTCCTTAGAGCACCACAGCAAGCCTTACAATCTATACAAGAAAAATACAAGAATGCAAAGTACCAAGGTGTATC
GTTCATCAGCCCTCCGGAGACACTCAACTTA

Alignment

ORF - retro_meug_32 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70. %
• Parental protein coverage: 99.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LRDVLLQDEQPPVPPWNAPGKQPAFTIHVDEPQAGPGQKAAGPGKDDLEDQALALQSATSLQDARRPLVP
          LRD.....EQ..VPPWN....Q..FT..V.E.......K...P.....ED.AL....A..L.....PLVP
Retrocopy LRDISV-NEQGDVPPWNTTSNQNPFTVRVYERVGENAKKLPVPKTVEPEDDALGYKAAVLLSETKKPLVP

Parental  LDYPMDGSFESPLTMDMSVVLEPEEKPPNVNEVPDYHEDIYLYLREMEVKCKPKVGYMKKQPDITNSMRA
          .DYPMD..F.SPL.MDMSV.LEPE.KPP.VNEVPDYHEDIY.YLREMEV..K.KVGY.K.QPD.T.SMRA
Retrocopy PDYPMDSRFGSPLPMDMSVALEPEAKPPDVNEVPDYHEDIYVYLREMEVQYKLKVGYIK-QPDLTDSMRA

Parental  ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYIT
          .LVDWLV.V..E..L.NETLHLAVNY.DRFLSS..V..GKLQL.GTAA.LLASKFEEI.PP..A.F...T
Retrocopy MLVDWLVMVEQETDLHNETLHLAVNYMDRFLSS-AVFQGKLQLLGTAALLLASKFEEIHPPTMARFLSLT

Parental  DDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQHANSKVESLAMFLGELSLIDADPYLKYLP
          D..YTK..VLRME.L.LKVL.FDLAAPTI.QFLTQYFLHQQ.ANS.VESLAMFLGELSLID.D.Y.KYLP
Retrocopy DEVYTKREVLRMEQLLLKVLDFDLAAPTIHQFLTQYFLHQQPANSRVESLAMFLGELSLIDTDLYQKYLP

Parental  SVTAGAAFHIALYTITGKSWPESLIQQTGYTLESLKPCLMDLHQTYLRAPQHAQQSIREKYKTPKYHGVS
          S...GAAFHIALYTITGKSWPESLIQ.TGYTLESLKPCL..LHQT.LRAPQ.A.QSI.EKYK..KY.GVS
Retrocopy STISGAAFHIALYTITGKSWPESLIQKTGYTLESLKPCLIALHQTFLRAPQQALQSIQEKYKNAKYQGVS

Parental  LINPPETLNL
          .I.PPETLNL
Retrocopy FISPPETLNL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_32 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_32 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004943	1 retrocopy	retro_btau_1335,
Macropus eugenii	ENSMEUG00000000128	1 retrocopy	retro_meug_32 ,
Myotis lucifugus	ENSMLUG00000005161	1 retrocopy	retro_mluc_400,
Monodelphis domestica	ENSMODG00000018931	1 retrocopy	retro_mdom_1309,
Oryctolagus cuniculus	ENSOCUG00000028042	1 retrocopy	retro_ocun_169,