RetrogeneDB ID: retro_meug_362

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold105450:6527..7222(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DDX49
• Ensembl ID: ENSMEUG00000011888
• Aliases: None
• Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:HGNC Symbol;Acc:18684]

Sequence

>retro_meug_362
GATTCCCAGGTTGAGGTCCACATCATGGAGCAGCTTGACCAGCAGTACTTACTGGTGCCTGAGAAGGTAAAGGATGCCTA
CCTGATCCACCTGATACAATACTTCCACTGAGGGCATGAAGACCTGTTCATCATCGTTTTCATCAGCACATTCAAGACCT
GCCACGTATTGAACATGATGCTGAGGAAATTCAGCTTCCCTTCTATTTCATTCCAGTCCCTGAGGAAGGAAAAAAGCTTG
TTTTGCTACTTTGGCCAAATTCAAGTTTAGCATCTTGTTTGCAACAGATGTGGCATCTGAAGGCTTGGATTTTCCCTCCA
TGCAGGTGGTCATTACCCATCATACTCCAAGCTTCTCCAAGATCTATGTCCAGTGAATAGGGCTGCTTTCCCTAGTAGGT
GTCACAGCATTGCCATTGCGTTGTGATCCAGTAAAATATACACCTATTACACTCCAGTCAGGAAGAGATCAAGAAGAAGC
TGTACAATTTGATATGGTGGAGGCCAAGGTGCTCAAAATCTTCACCCCAATCAACGTGGTCCAAAAAGAATGAGAGATTA
AACTGGAGGCCACAGACTTTGATGAGAAGAAAGAGATCAATAAGAGGAAGAAGCTAATCGTAGAAGGGGAGATCTCAACC
TGGAGGCCAAAAATAAGGCAGAGCTGGCCCAGATGAGCAGAAGAATAAACAGTTT

Alignment

ORF - retro_meug_362 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.22 %
• Parental protein coverage: 53.15 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  EAQAEVRTVEQLDQRYLLVPEKVKDAYLVHLIQTFHDEHEDWSIIIFTNTCKTCQVLNMMLRKFNFPSVA
          ..Q.EV...EQLDQ.YLLVPEKVKDAYL.HLIQ.FH..HED..II.F..T.KTC.VLNMMLRKF.FPS..
Retrocopy DSQVEVHIMEQLDQQYLLVPEKVKDAYLIHLIQYFH*GHEDLFIIVFISTFKTCHVLNMMLRKFSFPSIS

Parental  LHSMMKQ-KARFAALAKFKSSVYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAG-RH
          ..S..K..KA.FA.LAKFK.....IL.ATDVAS.GLD.P..QVVI.H.TP...KIY....G.....G..H
Retrocopy FQSLRKE>KACFATLAKFK---FSILFATDVASEGLDFPSMQVVITHHTPSFSKIYVQ*IGLLSLVG<CH

Parental  GTAITL-VTQYDIHLLHAIEEEIKKKLDD-FNVEEAKVLKILTQVNVVRRECEIKLEATDFDEKKEINKR
          ..AI.L.V.Q..IHLLH...EEIKKKL...F...EAKVLKI.T..NVV..E.EIKLEATDFDEKKEINKR
Retrocopy SIAIAL<VIQ*NIHLLHSSQEEIKKKLYN<FDMVEAKVLKIFTPINVVQKE*EIKLEATDFDEKKEINKR

Parental  KQLILEGK-DPDLEAKRKAELAKI-RQKNRQF
          K.LI.EG..D..LEAK.KAELA....QKN.QF
Retrocopy KKLIVEGE<DLNLEAKNKAELAQM<EQKNKQF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_362 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_362 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000011888	1 retrocopy	retro_meug_362 ,
Ornithorhynchus anatinus	ENSOANG00000004572	1 retrocopy	retro_oana_39,