RetrogeneDB ID: retro_meug_4

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold33861:10013..10595(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000010455
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: HPCA
• Ensembl ID: ENSMEUG00000001865
• Aliases: None
• Description: hippocalcin [Source:HGNC Symbol;Acc:5144]

Sequence

>retro_meug_4
ATGGGGAAGCAAAACAGCAAGCTCCGTCCTGAGGTGCTCCAGGATTTCCGGGAGAACACTGAATTCACAGACCACGAGCT
GCAGGCGTGGTACAAAGGGTTTCTAAAGGACTGTCCCACTGGCCACTTGACTGTCGATGAGTTCAAAAAGATATACGCCA
ACTTCTTTCCCTATGGTGACGCATCGAAGTTCGCAGAACACGTCTTCCGCACCTTCGACACAAACGGTGATGGGACGATT
GACTTCAGGGAATTCATCATCGCCCTGAGCGTCACTTCTCGGGGGAAGCTGGAACAGAAACTGAAGTGGGCATTTAGCAT
GTATGACCTTGATGGTAATGGCTATATAAGCCGTGGAGAGATGCTTGAAATTGTCCAGGCCATATACAAAATGGTATCCT
CAGTAATGAAAATGCCTGAAGATGAATCCACTCCTGAGAAGCGAACAGACAAAATTTTCCGGCAGATGGACACAAACAAC
GACGGCAAGCTGTCACTGGAAGAATTCATTAAAGGTGCCAAGAGTGATCCTTCCATTGTCCGGTTGTTACAGTGCGACCC
AAGCAGCGCAAGTCAGTTCTAA

Alignment

ORF - retro_meug_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.26 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGKQNSKLRPEMLQDLRENTEFSDLELQEWYKGFLKDCPTGILNVEEFKKIYANFFPYGDASKFAEHVFR
          MGKQNSKLRPE.LQD.RENTEF.D.ELQ.WYKGFLKDCPTG.L.V.EFKKIYANFFPYGDASKFAEHVFR
Retrocopy MGKQNSKLRPEVLQDFRENTEFTDHELQAWYKGFLKDCPTGHLTVDEFKKIYANFFPYGDASKFAEHVFR

Parental  TFDTNGDGTIDFREFIIALSVTSRGKLEQKLMWAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPE
          TFDTNGDGTIDFREFIIALSVTSRGKLEQKL.WAFSMYDLDGNGYISR.EMLEIVQAIYKMVSSVMKMPE
Retrocopy TFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRGEMLEIVQAIYKMVSSVMKMPE

Parental  DESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSTSQF
          DESTPEKRT.KIFRQMDTNNDGKLSLEEFI.GAKSDPSIVRLLQCDPSS.SQF
Retrocopy DESTPEKRTDKIFRQMDTNNDGKLSLEEFIKGAKSDPSIVRLLQCDPSSASQF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_4 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_4 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001865	1 retrocopy	retro_meug_4 ,
Pteropus vampyrus	ENSPVAG00000000363	1 retrocopy	retro_pvam_574,