>retro_meug_402
AATGGTCCTTCAGGAATCTGTCTGTCCTACCTACTCTCTGGCTATACTCCTTATGTGAAAGCTGATGCTGTCCATCCACA
CCCCATCCTGCAGAAGAAGCTGACCGAGAAGCCACATGTCTCTATCCTGGACCAGGACCTGGACTATCTATCAGAAGGCT
TGGAGGGCAGAAGTCAAAGCCCTGTGGCCCTGCTCTTTGATACTCTTCTGCGTCCAGACACAGATTTTGGAGGAAATACT
GAGTCTGTCCTTGCCTGGGAACACCAAGCGGAGCGAGTGATCCCCCACCTGGTCCTGGGTCGCAACCTCCCTGGAGGTGC
CTGGAATTCCATTGAAGGCTCCATGGTGACCTTAAGCCAGGGTGAGTGGATGGGGCTCCCTGATCTGCAATTTAAGGACT
GGATGCGGAAGACATACAGGGGACTGCGGGACAGCCGGGCCACAGGTGGAGACATCGCCCATTATTACCAGGATTATGTG
GTGAAGAAGGGACTGAGCCACAACTTCTTCTGTGGAACTGTGGTCACAGCTGTGGACATTGGGAGCACGGAGTCAGGGGA
GACCAGGAGCCAGCAAGATGGGAGCCCCCTGTTCTTGGTGAGTGGCTTTATGACCTCCACAGATGGGAGCCAGCAGCCTT
TCAGATTCCGTGCGCGCAATGTAGTCCTGGCCACAGGGACATCAGACAACCCAGCCCGGCTGGGCATTGTTGGAGAGGAT
CTCCCCTACGTTCATTATGACCTGTCTGCCTTAGAAGAGGCCATGAAGGCTGGGGATGTAACCCCCACATCTGACCCCGT
GCTCATCGTTGGGGCCAGGCTCTCAGCAGCCGATGCCATCCTGTATGCACGACGCTACAACCTCCCAGTGATCCATGCAT
TCCGCCGGCCTGTGGATGACCCTGGTCTCATCTTCAACCAACTCCCCAAGACAATGTACCCAGAGTACCAAAAAGTACAC
CAGATGATGCGGGAGAAATCTGTCCGCTCCTCCACTCGCTACAAAAGCTACTTGAGCCTGCCAAAACATCAGCCCCTGCT
CTTCCAGGAGGACCATGAGGCTGTGTTCCAAGATCAGAACGGGGAACACAGGGTATTCAGGGTCTCCCTTGTGCTGGTCC
TCATCGGCTCCTACCCTGACCTCTCATTCCTGGCCCATGGTGGCACTGACCTCACTGTGGACCCAGACCAACCACTCAGC
CCCAAGAGGAACCCCATTGAGGTTGACCCCTTCACCTACCAGAGCACCCGGCAGAGGCGCCTCTATGCCATGGGGCCCCT
GGTGGGAGACAACTTTGTGAGATTTGTGCAGGGAGGGGCATTGGCTGTAGCTAGTTCCCTGCTAAAAGAAAATAGGAAGC
CCCCC
ORF - retro_meug_402 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.8 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NGPSGICLSYLLSGYTPYVKADAVHPHPILQKKLTEKPHVSILDQDLDYLSEGLEGRSQSPVALLFDTLL |
| NGPSGICLSYLLSGYTPYVKADAVHPHPILQKKLTEKPHVSILDQDLDYLSEGLEGRSQSPVALLFDTLL |
Retrocopy | NGPSGICLSYLLSGYTPYVKADAVHPHPILQKKLTEKPHVSILDQDLDYLSEGLEGRSQSPVALLFDTLL |
|
Parental | RPDTDFGGNTESVLAWEHQAERVIPHLVLGRNLPGGAWNSIEGSMVTLSQGEWMGLPDLQFKDWMRKTYR |
| RPDTDFGGNTESVLAWEHQAERVIPHLVLGRNLPGGAWNSIEGSMVTLSQGEWMGLPDLQFKDWMRKTYR |
Retrocopy | RPDTDFGGNTESVLAWEHQAERVIPHLVLGRNLPGGAWNSIEGSMVTLSQGEWMGLPDLQFKDWMRKTYR |
|
Parental | GLRDSRATAGDIAHYYQDYVVKKGLSHNFFCGTVVTAVDIGSTESGRPGAQ-DGSPLFVVSGFMTSTDGS |
| GLRDSRAT.GDIAHYYQDYVVKKGLSHNFFCGTVVTAVDIGSTESG....Q.DGSPLF.VSGFMTSTDGS |
Retrocopy | GLRDSRATGGDIAHYYQDYVVKKGLSHNFFCGTVVTAVDIGSTESGETRSQQDGSPLFLVSGFMTSTDGS |
|
Parental | QQPFRFRARNVVLATGTSDNPARLGIVGEDLPYVHYDLSALEEAMKAGDVTPTSDPVLIVGAGLSAADAI |
| QQPFRFRARNVVLATGTSDNPARLGIVGEDLPYVHYDLSALEEAMKAGDVTPTSDPVLIVGA.LSAADAI |
Retrocopy | QQPFRFRARNVVLATGTSDNPARLGIVGEDLPYVHYDLSALEEAMKAGDVTPTSDPVLIVGARLSAADAI |
|
Parental | LYARRYNLPVIHAFRRPVDDPGLIFNQLPKTMYPEYQKVHQMMREKSVRSSTRYKGYLSLPKHQPLLFQE |
| LYARRYNLPVIHAFRRPVDDPGLIFNQLPKTMYPEYQKVHQMMREKSVRSSTRYK.YLSLPKHQPLLFQE |
Retrocopy | LYARRYNLPVIHAFRRPVDDPGLIFNQLPKTMYPEYQKVHQMMREKSVRSSTRYKSYLSLPKHQPLLFQE |
|
Parental | DHEAVFHDQNGEHRVFRVSLVLVLIGSYPDLSFLAHGGTDLTVDPDQPLSPKRNPIEVDPFTYQSTRQRR |
| DHEAVF.DQNGEHRVFRVSLVLVLIGSYPDLSFLAHGGTDLTVDPDQPLSPKRNPIEVDPFTYQSTRQRR |
Retrocopy | DHEAVFQDQNGEHRVFRVSLVLVLIGSYPDLSFLAHGGTDLTVDPDQPLSPKRNPIEVDPFTYQSTRQRR |
|
Parental | LYAMGPLVGDNFVRFVQGGALAVASSLLKENRKPP |
| LYAMGPLVGDNFVRFVQGGALAVASSLLKENRKPP |
Retrocopy | LYAMGPLVGDNFVRFVQGGALAVASSLLKENRKPP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_402 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_402 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.