RetrogeneDB ID: retro_meug_451

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold116055:2448..2973(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AKT1
• Ensembl ID: ENSMEUG00000009716
• Aliases: None
• Description: v-akt murine thymoma viral oncogene homolog 1 [Source:HGNC Symbol;Acc:391]

Sequence

>retro_meug_451
TGCAAGTTGATGAAGACAGAATTACCCAAAACCAATACATTCGTCATCTGCTGCCTGCAGTGGACCATGGTAATGGAGAG
AACGTTTCAAGTGGAGATCCCTGAAGAGCAGGAAGAATGGCCTAAAGCCATACAGTTGGTGGCTGACAGTCTGAAAAATT
AAGAACTGATGGACTTCTGGTCAGGCTCACCCAGTGACAATTCAGGAACTGAGGAGATGAAAGTGTCTAAGACAAAGCCC
AAACACAAAGGGACAATGAATGAATTTGAATACCTGAAGTTGCTGGGCAAAGGCACAATTGAGAAGGTTATCCTTGTGAA
GGAGAAATAAACTGGGAGATACTATGCCATGGTCCTTGAGAAGGTAGTGATTATGGCCAATGATGAGGTGGCACACAAGC
CTATGGAGAAGTGAGTCTTGCAGAACTCAAGGCACCTATTCCTGACAGCACTGAAGTACTCATTCCAGGCGCTCAACCCC
TTATGCTTTGTGATGGAGTATGCCAATGGAGGAAAGCTGTTCTTC

Alignment

ORF - retro_meug_451 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.66 %
• Parental protein coverage: 53.78 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CQLMKTERPKPNTFIIRCLXXXXXXXXXXXXXXXXXXEEWTKAIQMVADSLKKQEEEMMDFRSGSPSDNS
          C.LMKTE.PK.NTF.I.CL..................EEW.KAIQ.VADSLK..E...MDF.SGSPSDNS
Retrocopy CKLMKTELPKTNTFVICCLQWTMVMERTFQVEIPEEQEEWPKAIQLVADSLKN*E--LMDFWSGSPSDNS

Parental  GTEEMEVSTTKPKHKVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTEN
          GTEEM.VS.TKPKHK.TMNEFEYLKLLGKGT..KVILVKEK.TGRYYAM..L.K.VI.A.DEVAH...E.
Retrocopy GTEEMKVSKTKPKHKGTMNEFEYLKLLGKGTIEKVILVKEK*TGRYYAM-VLEKVVIMANDEVAHKPMEK

Parental  RVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFF
          .VLQNSRH.FLTALKYSFQ....LCFVMEYANGG.LFF
Retrocopy *VLQNSRHLFLTALKYSFQALNPLCFVMEYANGGKLFF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_451 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_451 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009716	1 retrocopy	retro_meug_451 ,