>retro_meug_456
AGTGATATCAACCAGCTGAACCAAGAGTCTATTGATGTCCAGGCCCTGATCAGACATTTCTATGACTCATACAGAAATTC
CTTCCTGCTGACCAAAGACCAGGAGAGGGAAATCTTGACAAGAAAGACAATGGACAAATAACCAATTGTTTTGTATGACA
AGAAATCCTTAATGATGGGAGAAGACCAGATTACTTTTAAGTACAACACATACCTGTAGGAACATAGCAAAGAAGTGGAC
AACCACATTTTCCAGACCTGTCAGTTCTACTATGTAGAGGCAGTCGAAGACATCACTGAGGATACTGAGATCATTCCAGG
TTTTCTCAATCTTTACTTGAATGAACAAGTGACCATCTTGATATATGGTGTTCATGAGAACATCTCCACCATGCTGACCT
CCTTAATGAATAAAGATGTGGTTCTTATATTTGACTGCCAAGGATTCATGATGAGGGAGTTTCTGGAGAGGCTTAGAAAA
CCCTTTGGTTACTTTATAGTGCCCAAGTATGAGTTTGTGGTAAAGTTCAATGCATTGAAATTAGATCATAGAGACTAAGT
AATATTTATAGTTGTCATTATCTCACTGGAGACCTCCCTGGTATGCCGAATGTAAAGGCCAATGAGGACATCTAGTGTAA
CTTTCTGAATGCTTTGGAGCTCCAGCTCAAGCTGAAGCACCTTGAAGTATCCCAACTGCTTGCCAGTTTCCTTCAGAAAA
TGACAGACCTCAGTCAGATTGTAACTGAGCATGTC
ORF - retro_meug_456 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.4 % |
Parental protein coverage: |
50.1 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | SDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHNT |
| SDI.QLN.ES.D..AL..H.YDSY..SF.LTK...R.ILT.KT.DK.P.V.YD..SLMMGED.I.FK.NT |
Retrocopy | SDINQLNQESIDVQALIRHFYDSYRNSFLLTKDQEREILTRKTMDK*PIVLYDKKSLMMGEDQITFKYNT |
|
Parental | PLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDG |
| .L.E.SKEV...IFQ.CQF..VEAV..ITE....IPGF.NL.LN.QVT.L.YGVHE.I.TML.SLMNKD. |
Retrocopy | YL*EHSKEVDNHIFQTCQFYYVEAVEDITEDTEIIPGFLNLYLNEQVTILIYGVHENISTMLTSLMNKDV |
|
Parental | VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAIKFNALELDDSDLAIFIAVII-LSGDRPGLLNVKPIE |
| VLI...QGFM.REFL..LRKPFG.F..PK.EF..KFNAL.LD..D..IFI.VII.L.GD.PG..NVK..E |
Retrocopy | VLIFDCQGFMMREFLERLRKPFGYFIVPKYEFVVKFNALKLDHRD*VIFIVVII<LTGDLPGMPNVKANE |
|
Parental | DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHV |
| DI..N.L.ALELQLKL.H.E.SQL.A..LQKMTDL.QIVTEHV |
Retrocopy | DI*CNFLNALELQLKLKHLEVSQLLASFLQKMTDLSQIVTEHV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_456 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_456 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.