>retro_meug_53
TTCATGCATTTGGGAGGCCTACGAACTGCCTTGTATAACTACACCTTTGCCAAGAAATACAAAGGGAGTTTCATCCTGAG
GTTGGAGGATACAGATCAAACCCGCCTGGTGCCTGGGGCTGCAGAGAACATCGAGGACATGTTGGAGTGGGCAGGCATTC
CTCCTGATGAAAGTCCTTGGTGTGGAGGCCCTGTCGGGCCCTACCAGCAGTCTTAGGGCCTGGAGCTCTATGCCCAAGCC
ACTGAGGCACTATTGCGGACTGGAGCTGCTTACTATTGCTTCTGTACCCCATGGTGCCTGGAGCTGCTGAAAAAAGAGGC
CCTCAGGAACCATCAGACACCCCGGTATGACAATCAGTGCAAGCTCTTGAGTCCTGAGCATGTGGCCAGGAAATTGGCAG
AAGGTGCCAAGCCAACTGTCCGCTTGCGTCTGGAGGAGGGAGCTGAGACTTTCCAGGACCTGGTATATGGCTGGAACCGG
CATGAAGTGGCCAGTGTTGAGGGTGACCCTGTGATCTTGAAAAGTGATGGTTTTCCCACCCATCACCTGGCCTGTGTGGT
GGATGACCATCATCTGGGCATTAGCCATGTTCTTCGAGGCAGTGAGTGGCTTGTCTCTACTGCCAAACATCTCCTTTTGT
ACAGGGCCCTGGGTGGGGAGCCACCCCACTTTGCCCATCTGCCTCTGCTTCTAACAAAGATGGCGGCAAGGGGACATCTT
TCTGGAATACTTTGCTTCAGCTGGCTTTCTTT
ORF - retro_meug_53 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.29 % |
Parental protein coverage: |
62.03 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | FMHLGGLRTALYNYIFAKKYKGSFILRLEDTDQTRLVPGAAENIEDMLEWAGILPDESPRRGGPVGPYQQ |
| FMHLGGLRTALYNY.FAKKYKGSFILRLEDTDQTRLVPGAAENIEDMLEWAGI.PDESP..GGPVGPYQQ |
Retrocopy | FMHLGGLRTALYNYTFAKKYKGSFILRLEDTDQTRLVPGAAENIEDMLEWAGIPPDESPWCGGPVGPYQQ |
|
Parental | SQRLELYAQATEALLRTGAAYYCFCTPRRLELLKKEALRNHQTPRYDNRCRLLSPEHVARKLAEGAKPTV |
| S..LELYAQATEALLRTGAAYYCFCTP..LELLKKEALRNHQTPRYDN.C.LLSPEHVARKLAEGAKPTV |
Retrocopy | S*GLELYAQATEALLRTGAAYYCFCTPWCLELLKKEALRNHQTPRYDNQCKLLSPEHVARKLAEGAKPTV |
|
Parental | GLRLEEGAETFQDLVHGWNRHEVASVEGDPVILKSDGFPTYHLACVVDDHHMGISHVLRGSEWLVSTAKH |
| .LRLEEGAETFQDLV.GWNRHEVASVEGDPVILKSDGFPT.HLACVVDDHH.GISHVLRGSEWLVSTAKH |
Retrocopy | RLRLEEGAETFQDLVYGWNRHEVASVEGDPVILKSDGFPTHHLACVVDDHHLGISHVLRGSEWLVSTAKH |
|
Parental | LLLYRALGWEPPHFAHLPLLL-NKDGSK-LSKWQGDIFLEYF |
| LLLYRALG.EPPHFAHLPLLL.NKDG.K..S.W.....L..F |
Retrocopy | LLLYRALGGEPPHFAHLPLLL<NKDGGKGTSFWNTLLQLAFF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_53 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_53 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.