RetrogeneDB ID: | retro_meug_568 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold138192:2555..3003(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPO | ||
Ensembl ID: | ENSMEUG00000010491 | ||
Aliases: | None | ||
Description: | centromere protein O [Source:HGNC Symbol;Acc:28152] |
Percent Identity: | 71.34 % |
Parental protein coverage: | 54.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | RIPIA-NLEPYE-SLKNSEENLEMKLEKAKA-FFQ-AFHLTGLSGKVTTKGVCICFNTAFEGNILDSYYV |
RIPI...LEPYE..LK....NLEMKL.K.KA.FF..AFHLT..SGK.T.KGV.ICFNTAFEGN..DSYYV | |
Retrocopy | RIPIT<YLEPYE<TLKKTK-NLEMKLKKDKA<FFW<AFHLTKFSGKLTMKGVRICFNTAFEGNVVDSYYV |
Parental | DVIIKKPLTI-HRHSVPVFIPLEQIAAKYLETNFQHFMYSLSEHLNAYSGRKYQADQLQCGFSAFLARPL |
D.IIKKPL.....HS.PVFI.LEQ.A...L.TNFQHFM.S...HLN.YS.RKYQADQLQC.FSAFLARPL | |
Retrocopy | DLIIKKPLDE<NHHSGPVFISLEQGATRHLQTNFQHFMFSFNKHLNTYSERKYQADQLQCSFSAFLARPL |
Parental | QRNPLCTLLSFTYTMDP |
QRN.LC.LLSFT.T.DP | |
Retrocopy | QRNSLCALLSFTCTVDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000010491 | 1 retrocopy |
retro_meug_568 ,
|
Pongo abelii | ENSPPYG00000012596 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050111 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005861 | 1 retrocopy |