RetrogeneDB ID: retro_meug_582

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold140280:4271..5258(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HEXB
• Ensembl ID: ENSMEUG00000007854
• Aliases: None
• Description: hexosaminidase B (beta polypeptide) [Source:HGNC Symbol;Acc:4879]

Sequence

>retro_meug_582
GATGCCATGGCATTTAATAAATTTAATGTTCTGCATTGGCATATAGTGGATGACCATTTTTTCCCATATCAGAGTTGGAC
TTATCCAGACTTAAGCAGAGAAGGAGCCTATTAGCCTGCCCTTATTTATACTTACACTGATGTCAAAGTTGTGATTGAAT
ATGCTGGATTACGAGGAATCAGAGTTATCCCAGAGTTTGATACTCCAGGCCATATGGAATCCTGGGAAAAAGGTCAGAAA
GACCTACTGACACCTTGTTATAGAGTCAGAGAAGACTGATTTTTTGGGCCTGCAAATCCGACTTTAAATTCAACCTATAC
ATTCATGTCGAATTTTTTCAAAGAAATTAGCAGAGTGTTTCCAGAAGACTACATTCATTTGGGAGGAGATGAAGTAGACT
TCGATTGTTGGGAATCAAACCCAGATGTGACACAATTCATGAGGCAACAAGGCTTAGGTCAAGATTACTCGAAACTTGAA
TCGTACTATATTCAGAGGCTTATAGACATCGTTTCACCTAGAAACAAAGGATACATGGTTTGGCAGGAAGTTTTTGATAA
TGGAGTAAAGCTTAAGAACGACACTATAGTTGAAGTATGGATCCAGTCTTCTTATAGTGAGGAGCTACAGAAAGTTACAG
CAGCTGGGTATGCTACAGTCCTTGCAGCTCCTTGGTACTTAGACTATATTACTTATGGACAAGATTGAAAAAAATACTGT
TCTGTGGAACCCCTTAATTTTGTTGGGACTGAAAAACAGAAAAACTTTGTACTTGGTGGAACAGCTGCCCTGTGGGGAGA
ATACATGGATGACACTAATCTCTCTCCAAGATTATGGCCTCGAGCAAGTGCTGTAGCAGAGCAGCTTTGGAGCCCCACAA
ATGTCCGAAACCTGGATGATGCTTATGATAGGCTGACAGAACATCGCTGCTGCATGGTCAGACATGGAATAAAAGCTCAA
CCTCTTTTCACTGGATATTGTGAAATG

Alignment

ORF - retro_meug_582 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.54 %
• Parental protein coverage: 62.67 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DAMAFNKFNVLHWHIVDDHSFPYQSWTYPDLSREGAYSPALIYTYTDVKVVIEYARLRGIRVIPEFDTPG
          DAMAFNKFNVLHWHIVDDH.FPYQSWTYPDLSREGAY.PALIYTYTDVKVVIEYA.LRGIRVIPEFDTPG
Retrocopy DAMAFNKFNVLHWHIVDDHFFPYQSWTYPDLSREGAY*PALIYTYTDVKVVIEYAGLRGIRVIPEFDTPG

Parental  HTESWGKXXXXXXXXCYNGQKTDSFGPVNPILSSTYTFMSNFFKEISRVFPEDYIHLGGDEVDFDCWESN
          H.ESW.K........CY.......FGP.NP.L.STYTFMSNFFKEISRVFPEDYIHLGGDEVDFDCWESN
Retrocopy HMESWEKGQKDLLTPCYRVRED*FFGPANPTLNSTYTFMSNFFKEISRVFPEDYIHLGGDEVDFDCWESN

Parental  PDVTQFMQQQGFGQDYRKLESYYIQRLIDIVSSTNKGYMVWQEVFDNGVKLKNDTIVEVWIESFYREELQ
          PDVTQFM.QQG.GQDY.KLESYYIQRLIDIVS..NKGYMVWQEVFDNGVKLKNDTIVEVWI.S.Y.EELQ
Retrocopy PDVTQFMRQQGLGQDYSKLESYYIQRLIDIVSPRNKGYMVWQEVFDNGVKLKNDTIVEVWIQSSYSEELQ

Parental  KVTAAGYATVLAAPWYLDYITYGQDWKKYYSVEPLNFVGTEKQKNLVLGGTAALWGEYVDDTNLSPRLWP
          KVTAAGYATVLAAPWYLDYITYGQD.KKY.SVEPLNFVGTEKQKN.VLGGTAALWGEY.DDTNLSPRLWP
Retrocopy KVTAAGYATVLAAPWYLDYITYGQD*KKYCSVEPLNFVGTEKQKNFVLGGTAALWGEYMDDTNLSPRLWP

Parental  RASAVAERLWSPQNVRNLDDAYDRLTEHRCRMVRRGIKAQPLFTGYCNV
          RASAVAE.LWSP.NVRNLDDAYDRLTEHRC.MVR.GIKAQPLFTGYC..
Retrocopy RASAVAEQLWSPTNVRNLDDAYDRLTEHRCCMVRHGIKAQPLFTGYCEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_582 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_582 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007854	1 retrocopy	retro_meug_582 ,