RetrogeneDB ID: retro_meug_593

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold14297:11878..12444(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NAPA
• Ensembl ID: ENSMEUG00000012750
• Aliases: None
• Description: N-ethylmaleimide-sensitive factor attachment protein, alpha [Source:HGNC Symbol;Acc:7641]

Sequence

>retro_meug_593
ATGGACAACTCCCGCAAGGAGGCAGAGGCTCTGGCACTGTGGACGAGGCAGAGCTCAAGGTCAAGAGCTCGCAGTCCTTT
CTCTCCAGGCTCTCATCCAGAATGGAGGAGGCCTGCGAAATCTACTCAAGAGCAGCGAATATGTTCAAGATGGCTCAGAG
CTGGAGCGCTGCTGGAAAAGCGTTCTGCCAGGCAGCCCAGCTACACCTCCCGCTGCAGAGCGAGCATGATGCTGCCACCA
GTTCTGTGGATGCGGGGAACACCTTCAGGAAAGCGGACCCCCAAGAGGTCATGAACTGTTGGATGAGAGCAACTGAGATT
TACACAGACATGGGCTGCTTCCCGATCGCAGCCAAACACCACATCTCCATTGCTGAGATCTTCGAGACAGAGCTGGTGGA
CTTCGCGAAGCCCATAGCTCATTGTGGGCAGTCTGCAGATTATTACAAGGGAGAAGAGTCCAACAGCTCTGCCAACAAGT
GCCTGCTGAAGGTGGCAGGCTACGCCGCTCAGCTGGAGCAGTACCAGAAGGCCATAGAGATCTATAAGCAGGTGGGGACA
AACGCC

Alignment

ORF - retro_meug_593 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.9 %
• Parental protein coverage: 65.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MDNSGKEAEALAL-LAEAERKVKNSQSFFSGLFGGSSKIEEACEIYSRAANMFKMAKSWSAAGNAFCQAA
          MDNS.KEAEALAL...EAE.KVK.SQSF.S.L...SS..EEACEIYSRAANMFKMA.SWSAAG.AFCQAA
Retrocopy MDNSRKEAEALAL<VDEAELKVKSSQSFLSRL---SSRMEEACEIYSRAANMFKMAQSWSAAGKAFCQAA

Parental  QLHLQLQSKHDAATSFVDAGNAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIE
          QLHL.LQS.HDAATS.VDAGN.F.KADPQE..NC.MRA.EIYTDMG.F.IAAKHHISIAEI.ETELVD..
Retrocopy QLHLPLQSEHDAATSSVDAGNTFRKADPQEVMNCWMRATEIYTDMGCFPIAAKHHISIAEIFETELVDFA

Parental  KAIAHYEQSADYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIEIYEQVGTNA
          K.IAH..QSADYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIEIY.QVGTNA
Retrocopy KPIAHCGQSADYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIEIYKQVGTNA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_593 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_593 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000013669	1 retrocopy	retro_acar_39,
Macropus eugenii	ENSMEUG00000012750	1 retrocopy	retro_meug_593 ,