RetrogeneDB ID: | retro_meug_757 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold178628:108..522(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PSMA8 | ||
| Ensembl ID: | ENSMEUG00000013254 | ||
| Aliases: | None | ||
| Description: | proteasome (prosome, macropain) subunit, alpha type, 8 [Source:HGNC Symbol;Acc:22985] |
Retrocopy-Parental alignment summary:
>retro_meug_757
TCTCCCCAGATGGGCACCTTTTCCAAGTGGAATATGCAGGAAGTGGTGAAAAAGAGCTTGACTATGGTTGGTTTATCAGG
AAAAGATACTGTTGTTCTTGGTATAGACAAGAAATCAGTGGCCATACTACGAGATGGAAGGACTGTGCGGAAGATCTGTG
CTTTGGATGACATTGTCTGCATGGTTTTTGCAGGGTTCACTACCAATGCTAGAATAGTTATGAATAGGGTTCATGCAGAG
TGCCAGAGTCATTGGCTCACTGTAGAGGATCCTGTCACAGTGGAATATATCACCGCTTACTTCGCAAGTCTGAAGCAGCA
TTATACTCAGAGTAACAGATGAAGACCTTTGGGCATTTCTGCACTTATTGTGGGATTTGACTTTGATGGAACTCCCAGAC
TTTACCAGACAGAC
ORF - retro_meug_757 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.86 % |
| Parental protein coverage: | 63.06 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SPDGHLFQVEYAQEAVKKGSTAVGIRGTDIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAFAGLTA |
| SP....F.....QE.VKK..T.VG..G.D.VVLG..KKSVA.L.D.RTVRKICALDD.VCM.FA..G.T. | |
| Retrocopy | SPQMGTFSKWNMQEVVKKSLTMVGLSGKDTVVLGIDKKSVAILRDGRTVRKICALDDIVCMVFA--GFTT |
| Parental | DARIVINQARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTD |
| .ARIV.N....ECQSH.LTVEDPVTVEYIT...A.LKQ.YTQSN..RP.GISALIVGFD.DG.PRLYQTD | |
| Retrocopy | NARIVMNRVHAECQSHWLTVEDPVTVEYITAYFASLKQHYTQSNR*RPLGISALIVGFDFDGTPRLYQTD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_757 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_757 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000013254 | 1 retrocopy |
retro_meug_757 ,
|
| Drosophila melanogaster | FBgn0004066 | 1 retrocopy |