RetrogeneDB ID: retro_meug_782

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold18755:5766..6329(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HINFP
• Ensembl ID: ENSMEUG00000015482
• Aliases: None
• Description: histone H4 transcription factor [Source:HGNC Symbol;Acc:17850]

Sequence

>retro_meug_782
TTTAACAATGGAGAGTGTTTGACCAGCATGTGGGAGGCCCATATCCTGTGTTGCAAATACAAGTCAGCCAGCAAGCAGAA
CCCATGTGGTACCATGTGCCTGGAAAGATTGCAACTGTACCTTAAAAGATCTTGTCAACTGAGAGAGCATCTTCGAAGTC
ACACCCAGGAGAGGGTGGTGGCCTGCCCCACCTGGGGGGTGTTTGCCAAGAACACCAAGTTCTTTGACCATATCCAGGAC
CAGACTTCAGTAGACCAATGACGATTCCAGTGTTCCTATTTCTCCAAGAGGTTTGCCATAGAGCCACTATGGCAGAACTA
CCTGGGCAAACACATAAATCACAAGTGCCCTTTGTGCAACAAGACCTGCCCGCTGCCCTCCTCCCTTCGAACTCCATTCC
CTTCCGACCCAGTGAAGACCAGCCCTTTAAATGGGATTACTGTAACAGCAGTTGTAAGAACCTGACTGACATCCCGAAGT
ATCTAGACACTCCTGGCAAGGAACCTGCCCATCGCTGTGAGTTTGAAAGCTGCTGCTTCAAAGTCCGAGCCAAGATACAA
GTG

Alignment

ORF - retro_meug_782 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.28 %
• Parental protein coverage: 50.4 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  FDNPEWFYRHVEAHSLCCEYKAASKEN-HVVPCGWKDCNCTFKG-RCKLREHLRSHTQEKVVACPTCGGM
          F.N.E......EAH.LCC.YK.ASK.N.HVVPC.WKDCNCT.K...C.LREHLRSHTQE.VVACPT.G..
Retrocopy FNNGECLTSMWEAHILCCKYKSASKQN>HVVPCAWKDCNCTLKD<SCQLREHLRSHTQERVVACPTWG-V

Parental  FANNTKFFDHIRRQTSLDQQRFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLR-NHIRF
          FA.NTKFFDHI..QTS.DQ.RFQCS..SKRFA.E.L.......H.NH.KCPLC..TCPLPSSLR.N.I.F
Retrocopy FAKNTKFFDHIQDQTSVDQ*RFQCSYFSKRFAIEPLWQNYLGKHINH-KCPLCNKTCPLPSSLR<NSIPF

Parental  RHSEDRPFKCDYCDYSCKNLIDLRKHLDTHSKEPAYHCEFESCNFSARSHCSI
          R.SED.PFK.DYC..SCKNL.D..K.LDT..KEPA..CEFESC.F..R.....
Retrocopy RPSEDQPFKWDYCNSSCKNLTDIPKYLDTPGKEPAHRCEFESCCFKVRAKIQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_782 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_782 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000015482	1 retrocopy	retro_meug_782 ,