RetrogeneDB ID: retro_meug_802

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold19174:6466..7401(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000009278
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ALDH1A3
• Ensembl ID: ENSMEUG00000002553
• Aliases: None
• Description: aldehyde dehydrogenase 1 family, member A3 [Source:HGNC Symbol;Acc:409]

Sequence

>retro_meug_802
ATACCTGCCCCAGTCACCAACTGCAAAATCCAGTACACTAAGATATTTATAAACAATGAATGGCATGATTCAGTGAGTGG
CAAGAAATTCCCAGTCATTAACCCTGCTACTGAGGAAAAAATTTGTGATGTAGAAGAAGGAGATAAGGCAGATGTGGACA
AGGCAGTGAAGGCAGCAAGGAAGGCTTTTCAGCTCGGATCCCCATGGAGGACAATGGATGCTTCAGAGAGAGGTCGGCTC
CTGAACAAACTGGCTGATTTAATTGAAAGAGATCGCCTGCTCTTGGCAACAATAGAATCAATGAATGCTGGAAAAGTCTT
CCCCACAGCCTACATGATGGATTTAGTCTCCTCTGTGAATGTTTTACACTATTATGCAAGCTGGGCTGATAAGGTGCAGG
GTCGTACAATCCCAATTGATGGGAAGTTTTTCTCATATACAAGACATGAACCTGTTGGTATTTGTGGCCAAATCATTCCT
TGGAATTTCCCTTTGATTATGCTTATGTGGAAAATTGCACCTGCCCTTTGCTGTGGAAACACCGTAATTGTTAAGCCAGC
AGAACAGACTCCACTAACTGCTCTTTATGTAGCATCATTAATTAAAGAGGCAGGATTTCCACCAGGAGTAGTGAATATTG
TGCCTGGTTATGGACCCACAGCTGGAGCAGCCATTTCTTCTCACATGGATGTAGATAAAGTAGCCTTCACAGGGTCCACA
GAGGTTGGCCTGCTAATTAAGGAGGCTGCTGGGAAGAGCAACCTAAAGAGGGTTTCACTGGAGCTGGGAGGAAAGAGCCC
TTGCATTGTATTTGCTGATGCTGACTTGGATAATGCTGTGGAATCCGCACACCTTGGGTTATTTTTCTACCACGGCCAGT
GCTGCACTGCTGCATCGAGGCTTTTTGTGGAGAGTCCATTTACAATGAGTTTGTT

Alignment

ORF - retro_meug_802 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.25 %
• Parental protein coverage: 63.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LPHPIRNLEVKHTKIFINNEWHESKSGKKFPTYNPSTVEKICEVEEGDK-DIDKAVEAAKAAFQRGSLWR
          .P.P..N.....TKIFINNEWH.S.SGKKFP..NP.T.EKIC.VEEGDK.D.DKAV.AA..AFQ.GS.WR
Retrocopy IPAPVTNCKIQYTKIFINNEWHDSVSGKKFPVINPATEEKICDVEEGDKADVDKAVKAARKAFQLGSPWR

Parental  QMDALSRGRLLHKLADLMERDRIILATLETMDTGKPFLHAFFIDLEGCIKTLRYYAGWADKIHGRTIPAD
          .MDA..RGRLL.KLADL.ERDR..LAT.E.M..GK.F..A...DL......L.YYA.WADK..GRTIP.D
Retrocopy TMDASERGRLLNKLADLIERDRLLLATIESMNAGKVFPTAYMMDLVSSVNVLHYYASWADKVQGRTIPID

Parental  ENVVCFTRHEPIGVCGAIIPWNFPLMLLIWKMAPALCCGNTIVIKPAEQTPLTSLYLGSLIKEVGFPPGV
          ......TRHEP.G.CG.IIPWNFPL..L.WK.APALCCGNT...KPAEQTPLT.LY..SLIKE.GFPPGV
Retrocopy GKFFSYTRHEPVGICGQIIPWNFPLIMLMWKIAPALCCGNTVIVKPAEQTPLTALYVASLIKEAGFPPGV

Parental  VNIVPGYGPTAGAAISSHPKIDKIAFTGSTEVGKLIKEAASKSNLKRVTLELGGKNPCIVCADADLDLAV
          VNIVPGYGPTAGAAISSH...DK.AFTGSTEVG.LIKEAA.KSNLKRV.LELGGK.PCIV.ADADLD.AV
Retrocopy VNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGLLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAV

Parental  ECAHRGVFFNQGQCCTAASRVFVE-EQIYPEFV
          E.AH.G.FF..GQCCTAASR.FVE.E.IY.EFV
Retrocopy ESAHLGLFFYHGQCCTAASRLFVE<ESIYNEFV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_802 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_802 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000002553	3 retrocopies	retro_meug_1574, retro_meug_1848, retro_meug_802 ,
Macropus eugenii	ENSMEUG00000008847	1 retrocopy	retro_meug_354,