RetrogeneDB ID: | retro_meug_842 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold206055:427..890(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000012013 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VAPB | ||
Ensembl ID: | ENSMEUG00000009788 | ||
Aliases: | None | ||
Description: | VAMP (vesicle-associated membrane protein)-associated protein B and C [Source:HGNC Symbol;Acc:12649] |
Percent Identity: | 78.98 % |
Parental protein coverage: | 72.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YDPNEK-SKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF--ELPAENDKPHDVEINKIMSTT |
YDPNEK.SK.KFMVQS.FA.TDTSDMEAVWKEAKPEDL.DSKL......EL..ENDKPHDVEINKIMS.. | |
Retrocopy | YDPNEK<SKPKFMVQSTFALTDTSDMEAVWKEAKPEDLIDSKLXXXXXXELQEENDKPHDVEINKIMSPM |
Parental | ATKTESSVMSKSI-SSSLDDTEAKKVMEECKRLQVEVQRLQEENKQFKEEDGLRMRKTLQSNSPASTSAT |
ATKTESSV.SKSI.S.SLDD.EAKK.MEECKRLQVE.QRLQEENKQFKE.DG..MRK.LQ.N.PASTSAT | |
Retrocopy | ATKTESSVISKSI<SFSLDDAEAKKIMEECKRLQVEIQRLQEENKQFKEGDGFHMRKALQGNIPASTSAT |
Parental | VVKEEGLSTRLLALVVL |
..KE.G.ST.LLAL.VL | |
Retrocopy | IEKEQGFSTQLLALIVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017424 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012711 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017229 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009788 | 1 retrocopy |
retro_meug_842 ,
|
Monodelphis domestica | ENSMODG00000016549 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009351 | 1 retrocopy |