RetrogeneDB ID: retro_meug_883

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold219434:1085..1378(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EMP2
• Ensembl ID: ENSMEUG00000000453
• Aliases: None
• Description: epithelial membrane protein 2 [Source:HGNC Symbol;Acc:3334]

Sequence

>retro_meug_883
TTCTGGATTGTGTTTCACATCACTTCGGCAGCACTGCTATTCATCCTCACCATCCACCACACTTGGTGAGTAGTAGAAGA
ATTTTTCCCAGTCATCTTGAGAGTGTGTCGCAACAACATAATTGTACAGAAACTGGTGATGACTTAGGGGGCTATGCCAC
TATACTAGCCATTCAAGCCACTATGATCCTCTCCACCATCCTCTGATGTATAGCCCTCTTTATTTTTGTTCTCAAACTCT
TCTGCATGAAGCAAGGAAAGAGATTTGTTCTAACTTCAATTATTCAGCTTCTG

Alignment

ORF - retro_meug_883 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.78 %
• Parental protein coverage: 93.33 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FIIVFHITSAALLFIATIDNAWWVGDEFFTDIWRVCRNNT-NCTEIGDDLKGYATIQAVQATMILSTILC
          F.IVFHITSAALLFI.TI...W.V..EFF..I.RVCRNN..NCTE.GDDL.GYATI.A.QATMILSTIL.
Retrocopy FWIVFHITSAALLFILTIHHTW*VVEEFFPVILRVCRNNI<NCTETGDDLGGYATILAIQATMILSTIL*

Parental  CIALFIFVLQLFRLKQGERFVLTSIIQLL
          CIALFIFVL.LF..KQG.RFVLTSIIQLL
Retrocopy CIALFIFVLKLFCMKQGKRFVLTSIIQLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_883 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_883 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017147	1 retrocopy	retro_cjac_1231,
Macropus eugenii	ENSMEUG00000000453	1 retrocopy	retro_meug_883 ,
Macaca mulatta	ENSMMUG00000008468	1 retrocopy	retro_mmul_1373,