RetrogeneDB ID:

retro_meug_901

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold225060:765..1556(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF41
Ensembl ID:ENSMEUG00000001320
Aliases:None
Description:ring finger protein 41 [Source:HGNC Symbol;Acc:18401]


Retrocopy-Parental alignment summary:






>retro_meug_901
GCTCCTAACTGTGAGCATGCCTTCTGCAACACCTGCATCACCCAGGGATCTTCTTGGCAGCAGACATGCCCTATGGATGG
AAGTGTGGTAACAGTCCCTCACCTGCGCCCTATTCCCCGAATTATGCGGAACATGCTGTCCAAACTTCAGATCACCTGCA
ACAATGCTGGGGCTGGTTGTAGTGCCATCTTGAGGCTTGACAATCTCATGGCTCATCTCATCAGTTGTGAACATAACCCC
AGGTGTCCTGTGGCCTGTAGGCATGGCTGTGGCTTAGAGATGTCCAATGAGGAACTGCCCAACCACAACTGCATCAAGCA
CCTACACTCCATGGTCCAACAGCAAGAGATGCACATCACGAAGCTGGAGAAGACATCAGCTGAGCAGAAATATGAGCTAG
CAGAACAGAAACGAGACATTCAGCTGCTGAAGGCCTATGCCCGTGCCCTCCACAGTGGCAGCCCCAATTTTCAGGAACTG
GAAGATACCAATGAGTACAATGAGACCATACAGTTGGTAAACTCCTTGCAGCCAGAAAGTGTGACAAGCTGGGAGGGTGG
GATCTCCACCCCAGATACTACGCACCAACCGATGATTAAGACTTCAATAGAAAATGACTGCTCAGTGCCATTGCCAAAAA
GCTGAATCCCCAAGAGCAACTGGTCCCTGGCCCTGGACACAGTAGGGACAGATCAGATGAAGCAGCGCTGCTTTGTGAGT
TGCAAGGCCAATGTGTCACTGGAAAGATGATAATGGTGGTGAATGCTTATAAGAAGGAACACATGCATGAC

ORF - retro_meug_901 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.85 %
Parental protein coverage: 93.38 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLM
AP.CEHAFCN.CITQ..S.QQTCP.D.SVVTV.HLRP.PRIMRNMLSKLQI.C.NA..GCSA..RLDNLM
RetrocopyAPNCEHAFCNTCITQGSSWQQTCPMDGSVVTVPHLRPIPRIMRNMLSKLQITCNNAGAGCSAILRLDNLM
ParentalSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDI
.HL..CEHNP..PV.C..GCGLEM...ELPNHNCIKHL.S.VQQQ...I..LEKTSAE.K..LAEQKRDI
RetrocopyAHLISCEHNPRCPVACRHGCGLEMSNEELPNHNCIKHLHSMVQQQEMHITKLEKTSAEQKYELAEQKRDI
ParentalQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA
QLLKAY.RA..S..PN.Q.LE.T.EYNE....VNSLQP..VT.W.G.ISTPD...Q..IK.S..E..C..
RetrocopyQLLKAYARALHSGSPNFQELEDTNEYNETIQLVNSLQPESVTSWEGGISTPDTTHQPMIKTS-IENDCSV
ParentalSIVNELIENAHERSWPQGLATLETRQMNRRYYENYVA-KRIPGKQAVVVMACENQHMGD
......I.......W...L.T..T.QM..R......A.....GK...VV.A....HM.D
RetrocopyPLPKS*IPKS---NWSLALDTVGTDQMKQRCFVSCKA<QCVTGKMIMVVNAYKKEHMHD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_901 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_901 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Macropus eugenii ENSMEUG00000001320 1 retrocopy
retro_meug_901 ,
Meleagris gallopavo ENSMGAG000000069161 retrocopy
Myotis lucifugus ENSMLUG000000060571 retrocopy
Mus musculus ENSMUSG000000253732 retrocopies
Otolemur garnettii ENSOGAG000000015254 retrocopies
Ochotona princeps ENSOPRG000000013481 retrocopy
Rattus norvegicus ENSRNOG000000234561 retrocopy
Sarcophilus harrisii ENSSHAG000000026791 retrocopy



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