RetrogeneDB ID: retro_meug_907

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold22695:6454..7123(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DGCR14
• Ensembl ID: ENSMEUG00000007959
• Aliases: None
• Description: DiGeorge syndrome critical region gene 14 [Source:HGNC Symbol;Acc:16817]

Sequence

>retro_meug_907
GTCCCCGATGGTGAGGATGTGTTTAAGAGGCAGGTGTTGCACAGAAACACGCGTTTTCTCAGGGACCCCTTCAGCCAGGC
CTTGAGCAAGTGCCAGCTGCAGCAGGCAGCTGCCTTCAGTGCCTGGCACAAACAAGGTAAAGTGGGACCTAATGGGAAGG
AGCTGATCGTTCAGGAGTGTCCCAAGGTCAATGGGTATGGATTCATGGCCACTCCTTCTCCAGCCCCTCCAGTGTAAAAG
AGTCTCCCATGATGACACGGGGTGAGGTTGAGAGCACCCCCCTGCGGATTGATGGGTCAGAAACTCCGTATGTGGATAGA
AATCCAGGGCCAGCCTCCAAGATCCTGGATCCTGGAATTAGAGAGAGTTTAGGTCTCAAGATGGCCACCAAAGCAGCTGC
TAAGAACTGAGCCAAGAAAGAGGAGGCCCTAAGAAGACTTACTGAGAACCTGTCCAACCTCACCCCCAAAAGGTCTGAGC
CCCGCTTTTTCCCCAGCCCTGCAAAGCCTGGCGAACAGGACTGCCAGCAAATACACCGCCAAGGCTCTGTGGGTCAGCTA
CACGCCCTCCCCTGTTCACCCTGGCTACAAGACTCCCACGGGCACTCCTGTCCTTGGCACTACCATGAGGACTCCTCTGA
CCCAGAACCCTGCTTCCATCACTGACAAC

Alignment

ORF - retro_meug_907 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.09 %
• Parental protein coverage: 52.46 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VPDGEDVFKKPRQVLHRNTRFLRDPFSQALSKSQLQQAAALNAQYKQGKVGPDGKELIPQESPKVNGYGF
          VPDGEDVFK..RQVLHRNTRFLRDPFSQALSK.QLQQAAA..A..KQGKVGP.GKELI.QE.PKVNGYGF
Retrocopy VPDGEDVFK--RQVLHRNTRFLRDPFSQALSKCQLQQAAAFSAWHKQGKVGPNGKELIVQECPKVNGYGF

Parental  VATPSP-APG-VNESPMMTWGEVESTPLRIDGSETPYVDRTPGPAFKILDPGRRERLGLKMATEAAAKNR
          .ATPSP..P..V.ESPMMT.GEVESTPLRIDGSETPYVDR.PGPA.KILDPG.RE.LGLKMAT.AAAKN.
Retrocopy MATPSP<SPSSVKESPMMTRGEVESTPLRIDGSETPYVDRNPGPASKILDPGIRESLGLKMATKAAAKN*

Parental  AKKQEALRRVTENLASLT-PKGLSPAMSPALQRLVNRTASKYTDKALRASYTPSPVHPGYKTPAGGPQTP
          AKK.EALRR.TENL..LT.PKGLSPA.SPALQ.L.NRTASKYT.KAL..SYTPSPVHPGYKTP.G.P...
Retrocopy AKKEEALRRLTENLSNLT>PKGLSPAFSPALQSLANRTASKYTAKALWVSYTPSPVHPGYKTPTGTPVLG

Parental  TGTPAPGTTTRTPLTQD
          T....P.T......T..
Retrocopy TTMRTPLTQNPASITDN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_907 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_907 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007959	2 retrocopies	retro_meug_1543, retro_meug_907 ,
Mus musculus	ENSMUSG00000003527	1 retrocopy	retro_mmus_2310,