RetrogeneDB ID: | retro_meug_944 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold2400:8375..9316(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FBXL6 | ||
| Ensembl ID: | ENSMEUG00000009915 | ||
| Aliases: | None | ||
| Description: | F-box and leucine-rich repeat protein 6 [Source:HGNC Symbol;Acc:13603] |
Retrocopy-Parental alignment summary:
>retro_meug_944
AAGGTGGAGAAGAAGATTCTCAGTTCTCTAGAGTGGCTGGTGCCCAACAGGTTTTCATTACTCCGGGAGCTTTCTCTATT
TAACTGGAAAAACTATGTACCTCTGATGCTGAAGGCTGTGAGTGAGTCTTGTCCCCACCTCACATCTCTCAAACTTTCCC
ACTGTCAGTCTGTGACAGCAGAGGCCCTGGTTCCTTTGTCCAGGGCCTGCCCCCAGCTGGATAGCCTCAACCTGCAGAAC
TGCCAGATAGTGTCAGCAGCAGTAGTTGGCTTCCTGGAGGCAGCAGGCAAACAACTCCGGCAGCTATGGCTAAGTTATAG
TAGTCAGATGACCTCCATCATCTCCTCACTTTCGAATGGATGCTGCCCCCAACTCCAGCTCCTTGAGGTGGACACAGGGA
TGAAACCCAACAGCCAACACTTTCGGATACACGTTGAAGCTCTGCAGGCTGGCTGTCCCCAGCTCCAGGTCCTGCGGTTA
CTGAACCTGGTTTGGTCTCCCAAGTGGGAGGGCGCGGGGTACCTCTGGGGCCTGGTTTCCCAGAACTGCAGGAACTCTGC
CTGGCCACATCCACCATCACCTATGTAAGTGACGAGATCCTACACCGCCTGCTGCATGCATCTCCTCACCTGCGGGTGCT
GGACCTCCGAGGCTGTGGCCTCCTCACACCTGCAGGCCTGGCCAGCTTGCCTTGCCCTGACCTAGAACAGCTACACCTGG
GCCTGTATGGTTCCGTAATTTGGGTGGCCCTGCCCAAGGAGGGAAGCCCTCTGTTCACGTGGAAGTGGCATCACACTCTC
CAGGAGCTAGACCTTAACGGCCAGTGTTACCACGAAGAAGATCTGAGGCGGGCCCTGGCAGCTTTCTCAAGCACAGAGAG
TAGGCACAGCCCACTTCGCTCTCTCAGCCTGAAGGGTACCCAAGTTACTGTGGCAACTATC
ORF - retro_meug_944 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.87 % |
| Parental protein coverage: | 83.38 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KVEKRILSSLEWLVPNRFSLLRELSLFNWKNYVPLMLKAVSESCPHLTSLKLSHCQSVTAEALVPLSRAC |
| KVEK.ILSSLEWLVPNRFSLLRELSLFNWKNYVPLMLKAVSESCPHLTSLKLSHCQSVTAEALVPLSRAC | |
| Retrocopy | KVEKKILSSLEWLVPNRFSLLRELSLFNWKNYVPLMLKAVSESCPHLTSLKLSHCQSVTAEALVPLSRAC |
| Parental | PQLDSLNLQNCQMVSAAVVGFLEAAA-QLRQLWLSYSSQMTSIISSLSNGCCPQLQLLEVDTGMKPNSQH |
| PQLDSLNLQNCQ.VSAAVVGFLEAA..QLRQLWLSYSSQMTSIISSLSNGCCPQLQLLEVDTGMKPNSQH | |
| Retrocopy | PQLDSLNLQNCQIVSAAVVGFLEAAGKQLRQLWLSYSSQMTSIISSLSNGCCPQLQLLEVDTGMKPNSQH |
| Parental | FRIHIEALQAGCPQLQVLRLLNLVWSPK-VGGRGVPLGPGFPELQELCLATSTITYVSDEILHRLLHASP |
| FRIH.EALQAGCPQLQVLRLLNLVWSPK.VGGRGVPLGPGFPELQELCLATSTITYVSDEILHRLLHASP | |
| Retrocopy | FRIHVEALQAGCPQLQVLRLLNLVWSPK<VGGRGVPLGPGFPELQELCLATSTITYVSDEILHRLLHASP |
| Parental | HLRVLDLRGCGLLTPAGLASLPCPDLEQLHLGLYGSVIWVALPKEGSPLFTWKWHHTLQELDLNGQCYHE |
| HLRVLDLRGCGLLTPAGLASLPCPDLEQLHLGLYGSVIWVALPKEGSPLFTWKWHHTLQELDLNGQCYHE | |
| Retrocopy | HLRVLDLRGCGLLTPAGLASLPCPDLEQLHLGLYGSVIWVALPKEGSPLFTWKWHHTLQELDLNGQCYHE |
| Parental | EDLRRALAAFSSRVG--TALRSLSLKGTQVTVATI |
| EDLRRALAAFSS.......LRSLSLKGTQVTVATI | |
| Retrocopy | EDLRRALAAFSSTESRHSPLRSLSLKGTQVTVATI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_944 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_944 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000009915 | 2 retrocopies |
retro_meug_2129, retro_meug_944 ,
|