RetrogeneDB ID: retro_meug_947

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold24137:8443..9340(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AURKC
• Ensembl ID: ENSMEUG00000014431
• Aliases: None
• Description: aurora kinase C [Source:HGNC Symbol;Acc:11391]

Sequence

>retro_meug_947
ACACCAAATAGCACTCTAAACACTGAGCAGTCTCAGACACCAGCGTCAGCAAACACTTCTGGAAAGGGAGAACCACCAAG
GCAGAAAAATGAGGAAACAAAAAAAAGGCAGTGGGCATTGGATGACTTTCAAATTGGTCGCCCTTTGGGAAAAGGAAAGT
TTGGAAGTGTTTACTTGGCACGAGAGAAGCAAAGCAAGTTTATCCTGGCACTTAAAGTGCTTTTTAAGTCCCATCTGGAA
AAAGCAGGAGTTGAACATCAGCTGAGGCGAGAAGTAGAAATCCGGTCTCATCTTAGGCATCCTAATATTCTGAGATTATA
TGGTTATTTTCATGATGTCACAAGAGTTTACCTAATTCTAGAATATGCACCTCCTGGAGAAGTCTATAGAGAGCTTCAAA
AGCTTTCAAAGTTTGGTGAACAGAGAACAGCTACTTATATCACAGAACTGGCAGATGCCTTATCATACTGCCACTCAAAA
AAGGTGATTCATCGTGATATTAAGCCAGAGAACTTACTACTTGGATCAGATGGAGAGCTGAAGATTGCAGATTTTGGCTG
GTCAGTTCATGCCCCATCATCTAGGAGGACAACTCTTTGTGGCACACTTGACTATCTACCTCCTGAGATGATTGAAAGCA
GGATGCATGATGAAAAGGTAGATCTTTGGAGTCTTGGAGTTCTGTGCTATGAATTTCTAGTTGGAAAACCTCCTTTTGAG
GCAGAAACTTATCAAGAAACTTACAGAAGCATTTCAAAGGTTGAATATAAATTCCCTGACTTTGTAACAGAAGGGGCTAG
AGATCTCATTTCAAGACTTTTGAAGCATAATCCTTACCAAAGGCTGACACTCAAGGAGGTCCTTGAACATCCTTGGATCA
TAGCAAATTCTTCGAAA

Alignment

ORF - retro_meug_947 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.56 %
• Parental protein coverage: 91.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TPSSTLLMNRSSVQPAA-VPGRIGVENSNTKSLPVHQFKIDDFEIGRPLGKGKFGNVYLAREKNSQFIVA
          TP.STL....S.....A...G...............Q...DDF.IGRPLGKGKFG.VYLAREK.S.FI.A
Retrocopy TPNSTLNTEQSQTPASANTSGKGEPPRQKNEEXXXXQWALDDFQIGRPLGKGKFGSVYLAREKQSKFILA

Parental  LKVLFKSQMEKEGVEHQLRREIEIQSHLRHPNILRLYNYFHDRSRVYLVLEYAPRGELYKELQKSHTFDQ
          LKVLFKS..EK.GVEHQLRRE.EI.SHLRHPNILRLY.YFHD..RVYL.LEYAP.GE.Y.ELQK...F..
Retrocopy LKVLFKSHLEKAGVEHQLRREVEIRSHLRHPNILRLYGYFHDVTRVYLILEYAPPGEVYRELQKLSKFGE

Parental  QRTATIMEELADALIYCHGKKVIHRDIKPENLLMGLRGELKIADFGWSVHAPSLRRKTMCGTLDYLPPEM
          QRTAT...ELADAL.YCH.KKVIHRDIKPENLL.G..GELKIADFGWSVHAPS.RR.T.CGTLDYLPPEM
Retrocopy QRTATYITELADALSYCHSKKVIHRDIKPENLLLGSDGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEM

Parental  IEGRTHDEKVDLWCIGVLCYELLVGNPPFESSSHSETYRRITKVDLKFPPSMPSGAQDLISKLLRHNPSE
          IE.R.HDEKVDLW..GVLCYE.LVG.PPFE.....ETYR.I.KV..KFP.....GA.DLIS.LL.HNP..
Retrocopy IESRMHDEKVDLWSLGVLCYEFLVGKPPFEAETYQETYRSISKVEYKFPDFVTEGARDLISRLLKHNPYQ

Parental  RLSLSKVLEHPWVQAHSRR
          RL.L..VLEHPW..A.S..
Retrocopy RLTLKEVLEHPWIIANSSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_947 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_947 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000023297	1 retrocopy	retro_cfam_1177,
Echinops telfairi	ENSETEG00000015413	1 retrocopy	retro_etel_1828,
Macropus eugenii	ENSMEUG00000014431	2 retrocopies	retro_meug_741, retro_meug_947 ,
Mus musculus	ENSMUSG00000070837	1 retrocopy	retro_mmus_2455,
Otolemur garnettii	ENSOGAG00000000999	6 retrocopies	retro_ogar_1122, retro_ogar_1159, retro_ogar_1240, retro_ogar_1293, retro_ogar_2384, retro_ogar_923,