RetrogeneDB ID: retro_meug_958

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold244192:52..954(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DAP3
• Ensembl ID: ENSMEUG00000015501
• Aliases: None
• Description: death associated protein 3 [Source:HGNC Symbol;Acc:2673]

Sequence

>retro_meug_958
TTGGACTCAAGACGCTTTCTGCATGTGAGTACCAAGGCATCACAAAGCATTGCTGTCAGTCTGGATACCCAGGTTCTAGG
TGAGAAATCCAGAACCATGTCTCAAACTCAAGAGAATGACCCCACTCACCATAGGGAGCAGCACCTCTGTCAGCACTACA
ATATTCCCCTGGAGGAACTGAAAACCATTTTCCCACATGGACTGTCCCCTCAATTTGGAATACAGGTGAAGACCTTCAAT
GAAGCCTGCCTGATGGTAAGACAGCCAGCCCTAGAGCTCCTGCACTACTTGAAAAGTACAAACTTTGCCAACCCTGCCAT
CCAATATGTCCTCTATGATGAGAAGGGCACAGGAAAAACTCTTACTCTTTGCCATGCAGTTCATTTCAGGGCAAAACAGG
ACTGGTTGATAATGCATGTTCCAGATGCTCACTGTTGGGTGAAAAATTGTCAGGATCTTCTGCAGTCTACCTACAACAAA
GAATGTTATGATCCACCCCTGAAAGCCTCAACCTGGCTAAAGAATTTCAAAACCTCAAATGAGCGGTTCCTGAACCAGAT
TAAAATTCAACAGAAGTACATCTGGAACAAATGGGAAAGCACAGAGGAATGCAGACCCCTTGGATAAGTAGTTGAGAGGG
CCTAAATCAAGTGAAAACTTCCAGTAATGCTGTGGGGATTGAGATGAAAGAACTGAAGAGGCAAAGTTCTTCGGGTTCCT
TCCACCTTCTAGTGGCAGTAGATACTGTCAATGCTCTCTGGGGGAGGACCACATTGAAAAATTAAGGCAAAAACCCGGCT
GCCCCAGAGAAGCTGACACTCATTCTTCTTAATATGAAGAAAATTTTGACCAATGATTGGCATGGAGGGGTTATTGTGAT
GAGTCTGGGCCAGACTGGCTCT

Alignment

ORF - retro_meug_958 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.79 %
• Parental protein coverage: 78.22 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LHSGCFLHVGTKASQSIAVSLDTQVLGEKCRTISRTQENDPANHREHHLCQHYSIPLEEMKTIFPHGLPP
          L.S..FLHV.TKASQSIAVSLDTQVLGEK.RT.S.TQENDP..HRE.HLCQHY.IPLEE.KTIFPHGL.P
Retrocopy LDSRRFLHVSTKASQSIAVSLDTQVLGEKSRTMSQTQENDPTHHREQHLCQHYNIPLEELKTIFPHGLSP

Parental  RFGMQVKTFNEA-LMVREPALEL-HYLRSTNFANPAIRYVIYGEKGTGKTLTLCHAVHFCAKQNWLIMHV
          .FG.QVKTFNEA.LMVR.PALEL.HYL.STNFANPAI.YV.Y.EKGTGKTLTLCHAVHF.AKQ.WLIMHV
Retrocopy QFGIQVKTFNEACLMVRQPALELLHYLKSTNFANPAIQYVLYDEKGTGKTLTLCHAVHFRAKQDWLIMHV

Parental  PDAHCWVKNCRDLLQSTYNKERYDQPLKASTWLKNFKTSNERFLNQIKIQQKYIWNKRESIEEGRPLGEV
          PDAHCWVKNC.DLLQSTYNKE.YD.PLKASTWLKNFKTSNERFLNQIKIQQKYIWNK.ES.EE.RPLG.V
Retrocopy PDAHCWVKNCQDLLQSTYNKECYDPPLKASTWLKNFKTSNERFLNQIKIQQKYIWNKWESTEECRPLG*V

Parental  VE-QGLNRVKNASDAVGIVMKELKRQSSLGSFRLLVAVDSVNALWGRTTLKKEDKSLVAPEELTLV-HNV
          VE..GLN.VK..S.AVGI.MKELKRQSS.GSF.LLVAVD.VNALWGRTTLK...K...APE.LTL...N.
Retrocopy VE<EGLNQVKTSSNAVGIEMKELKRQSSSGSFHLLVAVDTVNALWGRTTLKN*GKNPAAPEKLTLILLNM

Parental  KKMVTSDWHGGAIVVSLSQTGS
          KK..T.DWHGG.IV.SL.QTGS
Retrocopy KKILTNDWHGGVIVMSLGQTGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_958 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_958 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008125	1 retrocopy	retro_cjac_3159,
Macropus eugenii	ENSMEUG00000015501	1 retrocopy	retro_meug_958 ,