RetrogeneDB ID: retro_mgal_4

Retrocopy location

• Organism: Turkey (Meleagris gallopavo)
• Coordinates: 1:196867948..196869292(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMGAG00000015226
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: FZD9
• Ensembl ID: ENSMGAG00000001120
• Aliases: None
• Description: frizzled family receptor 9 [Source:HGNC Symbol;Acc:4047]

Sequence

>retro_mgal_4
TGTTTCTCTTTCTTGCAGTTCTTCCTTTGTTCGGTCTATGTCCCGATGTGCACGGAGAAGATTAACATCCCCATAGGTCC
CTGTGGTGGCATGTGCCTCTCCGTCAAAAGAAGATGTGAACCTGTTTTAAAAGAGTTTGGATTTGCCTGGCCGGACAGCC
TGAACTGCAGCAAATTCCCTCCCCAGAATGATCACAACCACATGTGCATGGAGGGCCCGGGAGATGAAGAGGTTCCCCTT
CATAGCAAGACATCCTTGCAGCCTGGAGAGGAGTGTCACAGCATGGGATCTAATTCAGATCAGTACATCTGGGTCAAGAG
AAACCTGGACTGTGTCCTGAAGTGTGGCTACGACGCTGGGCTCTACAGCAGGTCAGCGAAGGAGTTCACAGATATCTGGA
TGGCCGTGTGGGCCAGTCTGTGCTTCATATCAACTGCGTTCACAGTCCTGACCTTCCTGATTGATTCATCCAGATTTTCC
TACCCAGAGCGCCCAATCATATTTTTGAGCATGTGCTACAATATTTATAGCATTGCTTATATTGTGAGGCTAACTGTGGG
CCGGGAAAGGATATCCTGTGATTTTGAAGAGGCAGCAGAACCTGTTCTTATCCAAGAAGGTCTTAAGAACACAGGATGTG
CTATAATTTTCTTGCTGATGTACTTTTTCGGGATGGCTAGCTCCATCTGGTGGGTTATTCTGACACTGACGTGGTTTCTG
GCTGCAGGACTCAAGTGGGGCCACGAAGCTATAGAAATGCACAGCTCTTATTTCCACATCGCAGCCTGGGCTATCCCTGC
AGTGAAGACCATCGTCATTTTGATTATGAGACTGGTAGATGCCGATGAGCTCACTGGCCTGTGCTACGTTGGGAACCAGA
ACCTGGATGCGCTGACGGGCTTCGTGGTTGCTCCGCTTTTTACCTACCTGGTTATTGGAACTTTATTCATTGCAGCGGGA
TTAGTGGCCTTATTTAAAATCAGATCTAATCTTCAGAAAGATGGGACTAAAACTGACAAACTGGAGAGGCTGATGGTTAA
AATTGGTGTCTTCTCCGTGCTGTACACCGTCCCAGCAACGTGTGTGATTGCCTGTTATTTCTACGAAATCTCCAACTGGG
CCGTTTTCCGCTATTCGGCTGACGATTCCAATATGGCAGTGGAGATGCTCAAAATCTTCATGTCCCTTCTGGTGGGCATC
ACTTCAGGTATGTGGATCTGGTCAGCCAAAACTCTGCACACGTGGCAGAAGTGCTCGAACAGACTGGTGAACTCAGGGAA
AGTGAAACGGGAGAAAAGAGCGGACGGTTGGGTGAAACCTGGGAAAGGGAATGAGACTGTGGTG

Alignment

ORF - retro_mgal_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.28 %
• Parental protein coverage: 71.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NPEKFQYVEKSLSCAPRCSPGVDVYWSREDKNFAFVWMAVWSTLCFVSTAFTVLTFLLDPHRFQYPERPI
          N......V...L.C...C......Y.SR..K.F...WMAVW..LCF.STAFTVLTFL.D..RF.YPERPI
Retrocopy NSDQYIWVKRNLDCVLKCGYDAGLY-SRSAKEFTDIWMAVWASLCFISTAFTVLTFLIDSSRFSYPERPI

Parental  IFLSMCYNVYSVAFIIRSVAGAENIACD-RENGELYIIQEGLESTGCTIVFLILYYFGMASSLWWVVLTL
          IFLSMCYN.YS.A.I.R...G.E.I.CD..E..E...IQEGL..TGC.I.FL..Y.FGMASS.WWV.LTL
Retrocopy IFLSMCYNIYSIAYIVRLTVGRERISCDFEEAAEPVLIQEGLKNTGCAIIFLLMYFFGMASSIWWVILTL

Parental  TWFLAAGKKWGHEAIEAHSSYFHMAAWGIPAMKTIVILTMRKVAGDELTGLCYVGSMDVSALTGFVLIPL
          TWFLAAG.KWGHEAIE.HSSYFH.AAW.IPA.KTIVIL.MR.V..DELTGLCYVG.....ALTGFV..PL
Retrocopy TWFLAAGLKWGHEAIEMHSSYFHIAAWAIPAVKTIVILIMRLVDADELTGLCYVGNQNLDALTGFVVAPL

Parental  SCYLVVGTSFILTGFVALFHIRKIMKTGGTNTEKLEKLMVKIGVFSILYTVPATCVIVCYFYERLNVDYW
          ..YLV.GT.FI..G.VALF.IR......GT.T.KLE.LMVKIGVFS.LYTVPATCVI.CYFYE......W
Retrocopy FTYLVIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVKIGVFSVLYTVPATCVIACYFYE---ISNW

Parental  NLRALEASVPTVAVFMLKIFMSLVVGITSGVWVWSSKTLQTWQSLCNRKLGVRTRGKPCSGGGSWGRGRK
          ......A.....AV.MLKIFMSL.VGITSG.W.WS.KTL.TWQ..C...L......K.......W....K
Retrocopy AVFRYSADDSNMAVEMLKIFMSLLVGITSGMWIWSAKTLHTWQK-CSNRLVNSGKVKREKRADGWVKPGK

Parental  GNNPV
          GN..V
Retrocopy GNETV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Meleagris gallopavo was not studied using RNA-Seq expression data.

ChIP-Seq

Meleagris gallopavo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mgal_4 retrocopy.

TSS

Meleagris gallopavo was not studied using FANTOM5 data.

Lab

retro_mgal_4 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mgal_4 has 0 orthologous retrocopies within neognath group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Meleagris gallopavo	ENSMGAG00000001120	1 retrocopy	retro_mgal_4 ,