RetrogeneDB ID: retro_mluc_1036

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429789:3764089..3764765(-)
• Located in intron of: ENSMLUG00000007979

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HMG20B
• Ensembl ID: ENSMLUG00000022392
• Aliases: None
• Description: None

Sequence

>retro_mluc_1036
GGCCCGCGAGCCAGTGAGAATGGGGTCCCACGAGGAGGAGCCTGTGAAGAAGTGAGGCTGGCCCAAGGGAAAGAAGTGAA
AGAAGATCCTGCCAAATGGCCGCAAAACACCTGTCACTGGCTACGTGCACTTCCTGAACCAGAGGCAAGAGCAGATTCGC
ACGCACCACCCGGACCTGCCCTTTCCTGAGATCACCAAGATGCTGGGTGCCGAGTGGAGCAAACTGCAGCCCACAGAGAA
GCAGCGGTACCTGGATGAGGCCCAGAGGGAGAAGCAGCAGTACATAAAGGAGCTTCGCGCTTACCAGCAGTCAGAAGCCT
ACCAGATGTGCACCTAGAAGATCCAGGAAAAGAAGATCAAGGAAGAGGACTCAGGCTCCGGGCTCATGAATACCCTCTTG
AATGGACACAAGGGTGGGGACTGCGATGGCTTCTCCACCTTTGATGTCCCCATTTTCACTGAAGAGTTCTTGGACCAAAA
CAAAGCTCAGGAGGCGGAGCTGTGGCGCCTGCGGAAGATGAACGTGGCCTTCAAGGAGCAGAATGCGGTGCTGCAGAGGC
ACACCCAGAACATGAGCAGCGCACGCGAGTGCCTGGAGCAGGAGCTGGCGTTGGAGGAGAGGCGGACACTGGCGCTGCAG
TAGCAGCTCCAGGCTGTGCGCCAGGCGCTCGCTGCC

Alignment

ORF - retro_mluc_1036 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.71 %
• Parental protein coverage: 82.12 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GPRASDKG-SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG
          GPRAS..G.SHEEEPVKK.GWPKGKK.KKILPNG.K.PVTGYV.FLN.R.EQIRT.HPDLPFPEITKMLG
Retrocopy GPRASENG>SHEEEPVKK*GWPKGKK*KKILPNGRKTPVTGYVHFLNQRQEQIRTHHPDLPFPEITKMLG

Parental  AEWSKLQPTEKQRYLDEAEREKQQYIKELRAYQQSEAYKMCTEKIQEKKIKKEDSGSGLMNTLLNGHKGG
          AEWSKLQPTEKQRYLDEA.REKQQYIKELRAYQQSEAY.MCT.KIQEKKIK.EDSGSGLMNTLLNGHKGG
Retrocopy AEWSKLQPTEKQRYLDEAQREKQQYIKELRAYQQSEAYQMCT*KIQEKKIKEEDSGSGLMNTLLNGHKGG

Parental  DCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQNMSSARERLEQELALEERRT
          DCDGFSTFDVPIFTEEFLDQNKA.EAEL.RLRKMNVAF.EQNAVLQRHTQNMSSARE.LEQELALEERRT
Retrocopy DCDGFSTFDVPIFTEEFLDQNKAQEAELWRLRKMNVAFKEQNAVLQRHTQNMSSARECLEQELALEERRT

Parental  LALQQQLQAVRQALTA
          LALQ.QLQAVRQAL.A
Retrocopy LALQ*QLQAVRQALAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1036 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000047668	1 retrocopy	retro_btau_1571,
Myotis lucifugus	ENSMLUG00000011648	1 retrocopy	retro_mluc_1075,
Myotis lucifugus	ENSMLUG00000022392	1 retrocopy	retro_mluc_1036 ,