RetrogeneDB ID: retro_mluc_1042

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429790:5585953..5586906(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005318
• Aliases: None
• Description: None

Sequence

>retro_mluc_1042
GGGCTAGTGGTTTTAGTTTTCAAAAAAAAATAAACGAATATTTGAAGCCAACAACAGCAATTGGTGGAATCATTGCATAA
AGTTCTGGGAGGAAACCAGACCCTTACAGTAAATGTAGGGAGTATTAAACATTGCCAGATGATCAGACAGAAGTTGTCAT
TTATGTTATTGAGCGTTCTCCAAATGGTACTTCAAGAAGAGTTCCAGCTACAACACTATATGCCCATTTTGAACAAAGCG
ACATAAAAACACAGCTGCAGCAACTTGGTGTAACCCTCTCTCTGACTAGAACAGAACTTTCCCCTGCACAGGTCAAACAG
CTTTTTCAGAACCCCCTGCTGGTGTTGATCCTATCATCTGGGAACAAGCGAAGGTGGATAACCCTGAATCTGAAAAGTTA
ATTCCTGTACCAATGGTGGGTTTCAAAGAACTTCTTTGAAGACTGAAGGTTCAAGATCAGATGACTAAGCAGCATCAGAC
CAGATTAGATATTATATTTGAAGATATTGGCGAATTATAGAAGAATCAAACTACAACTATGGCCAAAATAGCACGATACA
AGAGGAAACTCCTGGACCTTTCCCATAGAACCTTACAGGTCCTGATCAAACAGGAAACTCCGAGGAAGAGTGGGTACACC
ATCCAAGCTGATGATGAGCAGTTGCGAGTTCAGCTACATACAATTCAGTGTGAACTAAATGCACCTACTCAGTTTAAGGG
CCGACTAACTGAACTGATGTCCCAAATCGGATGCAGAATCATTTTGGAGCAGTCAAATCTGAGGAAAGATATTACATAGA
TGCAGATCTGTTACGAGAAATCAATCAGCATTTGAAACAACAAGAAGGCCTCCTAGCCACTTGATTAGCATCATAAAAGA
TGATCTAGAAGATATAAAGTTAGTAGAACATGGATTGAATAAAACCATCTGCATCAGAGGTGGTGTATTTAGT

Alignment

ORF - retro_mluc_1042 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.47 %
• Parental protein coverage: 62.55 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  GLVVLVFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIK-TLPDDQTEVVIYVIERSPNGTSRRVP
          GLVVLVF....T.I.SQQQQLVESLHKVLGGNQTLTVNV..IK.TLPDDQTEVVIYVIERSPNGTSRRVP
Retrocopy GLVVLVFXXX*TNI*SQQQQLVESLHKVLGGNQTLTVNVGSIK<TLPDDQTEVVIYVIERSPNGTSRRVP

Parental  ATTLYAHFEQTNIKTQLQQLGVTLSMTRTELSPAQVKQLLQNP-PAGVDPIIWEQAKVDNPDSEKLIPVP
          ATTLYAHFEQ..IKTQLQQLGVTLS.TRTELSPAQVKQL.QNP.PAGVDPIIWEQAKVDNP.SEKLIPVP
Retrocopy ATTLYAHFEQSDIKTQLQQLGVTLSLTRTELSPAQVKQLFQNP<PAGVDPIIWEQAKVDNPESEKLIPVP

Parental  MVGFKELLRRLKVQDQMTKQHQTRLDIISEDIGELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQ
          MVGFKELL.RLKVQDQMTKQHQTRLDII.EDIGEL.KNQTTTMAKIA.YKRKL.DLSHRTLQVLIKQE..
Retrocopy MVGFKELL*RLKVQDQMTKQHQTRLDIIFEDIGEL*KNQTTTMAKIARYKRKLLDLSHRTLQVLIKQETP

Parental  RKSGYAIQADEEQLRVQLDTIQCELNAPTQFKGRLNELMSQI-RMQNHFGAVKSEERYYIDADLLREIKQ
          RKSGY.IQAD.EQLRVQL.TIQCELNAPTQFKGRL.ELMSQI.RMQNHFGAVKSEERYYIDADLLREI.Q
Retrocopy RKSGYTIQADDEQLRVQLHTIQCELNAPTQFKGRLTELMSQI<RMQNHFGAVKSEERYYIDADLLREINQ

Parental  HLKQQQEGL-SHLISIIKDDLEDIKLVEHGLNETIHIRGGVFS
          HLKQQ...L.SHLISIIKDDLEDIKLVEHGLN.TI.IRGGVFS
Retrocopy HLKQQEGLL<SHLISIIKDDLEDIKLVEHGLNKTICIRGGVFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1042 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000001341	1 retrocopy	retro_dord_86,
Myotis lucifugus	ENSMLUG00000005318	1 retrocopy	retro_mluc_1042 ,
Mus musculus	ENSMUSG00000034826	1 retrocopy	retro_mmus_484,