RetrogeneDB ID: retro_mluc_1052

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429791:1314115..1314624(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026026
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DCTPP1
• Ensembl ID: ENSMLUG00000013774
• Aliases: None
• Description: None

Sequence

>retro_mluc_1052
ATGTCCACTGTGGGTGGGGAGAAGCCTGGGGACGCGGGGGGCGAGGGCACCGAAACTGCCCGCCCCTTCAGCTTCAGCCC
GGAGCCCACGCTCGAGGACATCGGCCGCCTCCATGCTGAATTTGCTGCTGAAAGAGGCTGGGACCAGTTCCACCAACCTC
GGAACCTCCTCCTGGCCTTGGTGGGGGCAGTGGGGGAGCTGGCAGAGCTCTTTCAGTGGAAGCCCGACGGAAGGCTGGTC
CCCAAGCCTGGCCCCCTAAGGAACGGGCGGCCCTTCAAGAGGAGCTTAGTGATGTCCTCATCTACCTGGTAGCATTAGCA
GCCCGCTGCCGTGTGGATCTTCCCCAAGCAGTGCTCTCCAAGATGGACACCAACCGGAGACGCTACCCAGCACATCTGTC
CCGCGGCTCTTCTCGAAAGTATACAGACCTGCCCCACGGGGCCACCTCTGAAGACCAGACTGTGGGGACTGCAGACCTTG
CCTGTGAGTCCACAGGTCAGGCCTCAACC

Alignment

ORF - retro_mluc_1052 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.49 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSTVGGEKPGDAGGEGTEAARPFSFSPEPTLEDIRRLHAEFAAERDWDQFHQPRNLLLALVGEVGELAEL
          MSTVGGEKPGDAGGEGTE.ARPFSFSPEPTLEDI.RLHAEFAAER.WDQFHQPRNLLLALVG.VGELAEL
Retrocopy MSTVGGEKPGDAGGEGTETARPFSFSPEPTLEDIGRLHAEFAAERGWDQFHQPRNLLLALVGAVGELAEL

Parental  FQWKPDG-KAGPQAWPPKERAALQEELSDVLIYLVALAARCRVDLPQAVLSKMDTNRRRYPAHLSRGSSR
          FQWKPDG.KAGPQAWPPKERAALQEELSDVLIYLVALAARCRVDLPQAVLSKMDTNRRRYPAHLSRGSSR
Retrocopy FQWKPDG<KAGPQAWPPKERAALQEELSDVLIYLVALAARCRVDLPQAVLSKMDTNRRRYPAHLSRGSSR

Parental  KYTDLPHGATSGDQTVGTADLACESTGQAST
          KYTDLPHGATS.DQTVGTADLACESTGQAST
Retrocopy KYTDLPHGATSEDQTVGTADLACESTGQAST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1052 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016594	1 retrocopy	retro_cfam_887,
Callithrix jacchus	ENSCJAG00000002621	2 retrocopies	retro_cjac_43, retro_cjac_676,
Myotis lucifugus	ENSMLUG00000013774	1 retrocopy	retro_mluc_1052 ,
Otolemur garnettii	ENSOGAG00000011361	1 retrocopy	retro_ogar_874,
Rattus norvegicus	ENSRNOG00000017850	2 retrocopies	retro_rnor_1173, retro_rnor_2626,
Sus scrofa	ENSSSCG00000007796	1 retrocopy	retro_sscr_676,