RetrogeneDB ID: retro_mluc_1139

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429798:3007635..3008814(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026102
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015584
• Aliases: None
• Description: None

Sequence

>retro_mluc_1139
GCTTGCCTCTGCAGTGTAGGCCCTCCGTGGGGATGCCGCTGTCGCCAGCAGCAACCGGGCCCAGCCGAGAAGGCGGTGGC
CAACAGCGAGCGGGACCCGGACCCGGAAGAGGAGCACGTCGAGGCGGACGCGGAGGTGCTCTTCGGTGCTGGGAGTGGCG
GCATCCTGAGTCCCGCGCGAACCCGGCGCTGCTCGCTGCTGCAGGACCTGCCTCCGGAGCTGCTGGTGGAGATCTTCGCC
TCGCTCCCCGGCACCGACCTGCCCAGCCTGGCCCAGGCCTGCACCAAGTTCCGTCGCATCCTGCGCACCGACAGCATCTG
GAGGCGGCGCTGCCGGGAGGAGTTTGGCGTTGGTGAAAACTTGCAGAACCTGAAGATCATGGGTGTGTCTTGTCAGGAAG
TCTATGCGAAGCTGCTCCACCCATACAGACACATTTTGGGACTGTGGCAGCCAGATATCCGGCCCTTTGGAGGGCTGCTG
AATGTAGTGGTGGACGGCTTGTGCATTATTGGCTGGAGGTACCTGCCTCCCCATTACCCCCGGGTGGATGACCCAATGCA
AATCAAGCCCGCGTTCAGAATTCACCTGACGGAGAGGAAATCGGCCGCGGTGGAGTGCATGTTCAGCCACAGAGGGCCCC
AGAGCGGCCACATCCAGATGCTGAAGGATGAGTTCTCCACCAAGTGCAACCAGCCGGACCACCAAAGGATGTCTGGCGGG
AGACTAGAGGAATTCCGAGCGTGGCTGAGAGAAGAATGCGGGCGGACGCCGGAGGACATTTCCCAGGAGGACTGGGAGGA
ATTAGTCCTGATGAAGTTCATCTATAGTCAGTATGACAACTGCCTGACCTACCGCCGCATTTACCTCCCGCCCAGCCACC
CAGACGACCTCATCAGGCCAGGCCTCTTCAAAGGCAACTACGATGTCCACGGCCTAGAGATTGTCATGCTCAGCTTCCAT
GGGAAGCATGCCAGGGCCACGAAGATCACGGGTGACCCCAACATCCCTGCCGGGCAGCAGACGATAGAGATCAGCCTCAT
GCACCGCATCCAGCTGCCTGTTGTCCAGAACCTCGGCAACTTCAACAAGCTCTCCCGCATCGTCCTGGAGGTTCATGAGC
AGGTGAGCCTGGAGCAGCAGCAGCAAGAAGACAGGCCTGGGGACAGCGAGGGCCATGGC

Alignment

ORF - retro_mluc_1139 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.19 %
• Parental protein coverage: 76.65 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ARLCGVGPSRGCRRRQQRRDPAETAAADSEPDTDLEEERIEAGAAELCSEWSGRSSSPSPPPRCSLLE-L
          A.LC.VGP..GCR.RQQ...PAE.A.A.SE.D.D.EEE..EA.A..L....SG...SP....RCSLL..L
Retrocopy ACLCSVGPPWGCRCRQQQPGPAEKAVANSERDPDPEEEHVEADAEVLFGAGSGGILSPARTRRCSLLQDL

Parental  PPELLVEIFASLPGTDLPSLAQVCTKFCRILHNDTIWRRRCREEYGVCENLRKLEITGVSCRDVYAKLLH
          PPELLVEIFASLPGTDLPSLAQ.CTKF.RIL..D.IWRRRCREE.GV.ENL..L.I.GVSC..VYAKLLH
Retrocopy PPELLVEIFASLPGTDLPSLAQACTKFRRILRTDSIWRRRCREEFGVGENLQNLKIMGVSCQEVYAKLLH

Parental  RYRHILGLWQPDIGPYGGLLNVVVDGLFIIGWMYLPPHDPHVDDPMRFKPLFRIHLMERKSATVECMYGH
          .YRHILGLWQPDI.P.GGLLNVVVDGL.IIGW.YLPPH.P.VDDPM..KP.FRIHL.ERKSA.VECM..H
Retrocopy PYRHILGLWQPDIRPFGGLLNVVVDGLCIIGWRYLPPHYPRVDDPMQIKPAFRIHLTERKSAAVECMFSH

Parental  RGPHNGHIQIVKKDEFSTKCNQTEYHRMSGGRQEEFRTWLREEWGRTLEDIFHEHMQELILMKFIYTSQY
          RGP..GHIQ...KDEFSTKCNQ....RMSGGR.EEFR.WLREE.GRT.EDI..E...EL.LMKFIY.SQY
Retrocopy RGPQSGHIQML-KDEFSTKCNQPDHQRMSGGRLEEFRAWLREECGRTPEDISQEDWEELVLMKFIY-SQY

Parental  DNCLTYRRIYLPPSHPDDLIRPGLFKGTYGSHGLEIVMLSFHGKHARVTKITGDPNIPAGQQTVEIDLMH
          DNCLTYRRIYLPPSHPDDLIRPGLFKG.Y..HGLEIVMLSFHGKHAR.TKITGDPNIPAGQQT.EI.LMH
Retrocopy DNCLTYRRIYLPPSHPDDLIRPGLFKGNYDVHGLEIVMLSFHGKHARATKITGDPNIPAGQQTIEISLMH

Parental  RIQLPNVENLCNFNELSRIVLEAQEQVRQEQQRQEDRTEDGEGSG
          RIQLP.V.NL.NFN.LSRIVLE..EQV..EQQ.QEDR..D.EG.G
Retrocopy RIQLPVVQNLGNFNKLSRIVLEVHEQVSLEQQQQEDRPGDSEGHG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1139 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000015584	1 retrocopy	retro_mluc_1139 ,