RetrogeneDB ID:

retro_mluc_1157

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429800:1756047..1756683(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000026626
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:DGAT2
Ensembl ID:ENSMLUG00000017447
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1157
CGGTCACAGTGGGTCCGAAATTGGGCTGTGTGGCGCTGCTTTCGAGACTACTTTCCCATCCGGCTGGTGAAGACTCACAA
CCTGCTGACCACCAGGAACTACATCTTGGGATACCACCCCCATGGCATCATGGCTGTGGGTGCCTTCTGCAACTTCAGCA
CAGAGGCCACGGAAGTGAGCAAGAAGTTTCCCGGCATAAGGCCCCACCTGGCCACGCTGGCCGGCAACTTTCGGGTGCCA
GTGCTGAGGGAGTACCTGATCTCCGGAGGCTTCTGCCCGGTGAACCGGGGCACCATAGACTACTTGCTTTCAAAGAACGG
GAGTGGCAATGCCATCATCATCGCACTGGGGGGCGCAGCCGAGTCCCTGAGCTCCGTGCCCGGCAAGAATGTGGTCATCC
TGCACAACCACAAGGGCTTTGTGAAACTGGCCCTGCGACATGGAGCCGACCTTGTTCCCACCTACTCGTTCGGAGAGAAT
GAGGTCTACAAGCAAGTGATCTTTGAAGTGGGCTCCTGGGGCCGATGGGTCCAGAGCAAGTTCCAGAAGCACATTGGCTT
CGCCCCGTGCATCTTCCATGGCCGAGGCCTCTTCTCTGACACCTGGAGGCTGCTGCCTTACTCCAAGCCCATCACC

ORF - retro_mluc_1157 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.2 %
Parental protein coverage: 55.04 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRSQWVRNWAVWRYFRDYFPIQLVKTHNLLTTRNYIFGYHPHGIMGLGAFCNFSTEATEVSKKFPGIRPYL
RSQWVRNWAVWR.FRDYFPI.LVKTHNLLTTRNYI.GYHPHGIM..GAFCNFSTEATEVSKKFPGIRP.L
RetrocopyRSQWVRNWAVWRCFRDYFPIRLVKTHNLLTTRNYILGYHPHGIMAVGAFCNFSTEATEVSKKFPGIRPHL
ParentalATLAGNFRMPVLREYLMSGGICPVNRDTIDYLLSKNGSGNAIIIVVGGAAESLSSMPGKNAVTLRNRKGF
ATLAGNFR.PVLREYL.SGG.CPVNR.TIDYLLSKNGSGNAIII..GGAAESLSS.PGKN.V.L.N.KGF
RetrocopyATLAGNFRVPVLREYLISGGFCPVNRGTIDYLLSKNGSGNAIIIALGGAAESLSSVPGKNVVILHNHKGF
ParentalVKLALRHGADLVPTYSFGENEVYKQVIFEEGSWGRWVQKKFQKYIGFAPCIFHGRGLFSSDTWGLVPYSK
VKLALRHGADLVPTYSFGENEVYKQVIFE.GSWGRWVQ.KFQK.IGFAPCIFHGRGLF.SDTW.L.PYSK
RetrocopyVKLALRHGADLVPTYSFGENEVYKQVIFEVGSWGRWVQSKFQKHIGFAPCIFHGRGLF-SDTWRLLPYSK
ParentalPIT
PIT
RetrocopyPIT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1157 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG000000248471 retrocopy
Myotis lucifugus ENSMLUG00000017447 1 retrocopy
retro_mluc_1157 ,



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