RetrogeneDB ID: retro_mluc_1168

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429803:3018821..3019555(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030359
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014596
• Aliases: None
• Description: None

Sequence

>retro_mluc_1168
ATGCCGCTCCAGCCTTCAAGCAAAGACACAGAAGAGATGGAAGCAGAGGGTGATTCAGCTGCCAAGATGAACGGAGAGGA
AGAAAGAGTGAGGAGGAACGAAGTGGCAGCCAGACCGAGTCCAAGGAGGAGAGCTCAGAGATGGACGATGAGGACTACGA
ACGGCGCCACAGCGAGTGCATCAATGAGATGCTGGACCTGGAGAAGCAGTTCTCGGAGCTAAAGGAGAAGTTGTTCAGGG
AACGACTAAGTCAGCTGCAGGTGCGGCTGGAGGAAGTGGGGGCTGAGAGAGCACCCGAATACACAGAGCCCCTGGGGGTG
CTGCAGAGGAGCCTCAAGATTCACATTCAGGTGGCAGGGATCTACAAGGGCTTCTGTCTGGACGTGATCAGGAATAAGTA
TGAGTGTGAGCTGCAGGGAGCTAAGCAGCACCTGGAGAGTGAGAAGCTGCTGCTCTATGACACGCTGCAGGGGGAGCTGC
AGGAGCAGATGCAGAGGCTGGAGGAGGACCGCCAGAGCCTGGACATCAGCTCGGAGTGGTGGGATGACAAACTGCACACC
AGAGGCAGCTCAAGGACCTGGGACTCCCTGCCGCCCAGCAAGAGGAAGAAGGCACCCCTCGTTTCTGGCCCTTATATTGT
GTACATGCTGCAGGAGATCGACATCCTGGAGGACTGGATGGCTATCAAAAAGGCTAGGGCAGCTGTGTCCCCTCAGAAGA
GACAATCAGATGGA

Alignment

ORF - retro_mluc_1168 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.72 %
• Parental protein coverage: 99.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPLQPSSKDTEEMEAEGDSAAEMNGEEE-ESEEERSGSQTESEEESSEMDDEDYERRRSECVSEMLDLEK
          MPLQPSSKDTEEMEAEGDSAA.MNGEEE..SEEERSGSQTES.EESSEMDDEDYERR.SEC..EMLDLEK
Retrocopy MPLQPSSKDTEEMEAEGDSAAKMNGEEE<KSEEERSGSQTESKEESSEMDDEDYERRHSECINEMLDLEK

Parental  QFSELKEKLFRERLSQLQVRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVIRNKYECELQ
          QFSELKEKLFRERLSQLQVRLEEVGAERAPEYTEPLG.LQRSLKI.IQVAGIYKGFCLDVIRNKYECELQ
Retrocopy QFSELKEKLFRERLSQLQVRLEEVGAERAPEYTEPLGVLQRSLKIHIQVAGIYKGFCLDVIRNKYECELQ

Parental  GAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDISSEWWDDKLHTRGSSRTWDSLPPSKRKKAPLVS
          GAKQHLESEKLLLYDTLQGELQE..QRLEEDRQSLDISSEWWDDKLHTRGSSRTWDSLPPSKRKKAPLVS
Retrocopy GAKQHLESEKLLLYDTLQGELQEQMQRLEEDRQSLDISSEWWDDKLHTRGSSRTWDSLPPSKRKKAPLVS

Parental  GPYIVYMLQEIDILEDWTAIKKARAAVSPQKRKSDG
          GPYIVYMLQEIDILEDW.AIKKARAAVSPQKR.SDG
Retrocopy GPYIVYMLQEIDILEDWMAIKKARAAVSPQKRQSDG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1168 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012784	1 retrocopy	retro_cfam_2100,
Myotis lucifugus	ENSMLUG00000014596	1 retrocopy	retro_mluc_1168 ,
Rattus norvegicus	ENSRNOG00000047683	1 retrocopy	retro_rnor_576,