RetrogeneDB ID: retro_mluc_1227

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429808:3180568..3181071(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TBC1D7
• Ensembl ID: ENSMLUG00000001609
• Aliases: None
• Description: None

Sequence

>retro_mluc_1227
ATGACTGAGGATTCTCAGAGAAACTTTCGGTCAGTATATTATGAGAAAGTGGGTTTTCGTGGAGTTGAAGAAAAGAAATC
ATTAGAAATTCTCCTAAAAGTTGACCGTTTGGATATTGAGAAACTTTGTACTTTTAGTCAAAGGTTTCCTCTCCCGTCTA
TGTCCCGTGCATTGGTATGGAAGGTGCATCTAGGGATCCTGCCTCCACACCGTGAGTCCACGCCCCGGGGATGATGTATC
CTAAGGGGCAGTACTTGGATGTCGTCCTTCATGCCCTGAAAGTCGTTTGCTTTGTCAGCGATGCCACAGCTCAGGGTGAA
GTCTATCTCCGCATGTATCTGCTAGAGTCTGGAAAGTTGCCTCAAAGTCCCTCCTCCCCGCTGAGGCCAGAAGATGAAGT
GTTTCTTGCCATTGCTAAGGCCATGGAAGAGATGGTGGAAGATAGTGTCGACTGTTACTGGATCACCCGATGCTTTGGGA
ACCAGTTAAACAACAAGTACCGT

Alignment

ORF - retro_mluc_1227 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.76 %
• Parental protein coverage: 57.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSMYRALVWKVLLGILPPH
          MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLK.DRLDIEKLCTFSQRFPLPSM.RALVWKV.LGILPPH
Retrocopy MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKVDRLDIEKLCTFSQRFPLPSMSRALVWKVHLGILPPH

Parental  HES-HTQVMMYRKGQYSDV-LHALKVVRFVSDATPQVEVYLRMYQLESGKLPRSPSFPLKPEDEVFLAIA
          .ES.H...MMY.KGQY.DV.LHALKVV.FVSDAT.Q.EVYLRMY.LESGKLP.SPS.PL.PEDEVFLAIA
Retrocopy RES<HAPGMMYPKGQYLDVVLHALKVVCFVSDATAQGEVYLRMYLLESGKLPQSPSSPLRPEDEVFLAIA

Parental  KAMEEMVEDSVDCYWITRCFVNQLNNKYR
          KAMEEMVEDSVDCYWITRCF.NQLNNKYR
Retrocopy KAMEEMVEDSVDCYWITRCFGNQLNNKYR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1227 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001609	1 retrocopy	retro_mluc_1227 ,