RetrogeneDB ID: retro_mluc_1295

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429816:573482..574061(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NAA60
• Ensembl ID: ENSMLUG00000017721
• Aliases: None
• Description: None

Sequence

>retro_mluc_1295
ATGACAGAGGTGGTGCCATCCAGCGCCCTCAGCGAGGTCAGCCTACGCCTCCTCTGCCACGATGACATAGACACTGTGAA
GCATCTGTGTGGCGACTGGTTCCCCATCGAGTACCCAGACTCATGGGATCGTGACATCACCTCCAACAAGAAGTTCTTTT
CCCTTGCTGCAACCTACAGGGGTACCATTGTAGGAATGATAGTAGCTGAAATAAAAAGTAGGACCAAGATACACAAGGAG
AATGGAGATATTCTAGCCTCCAACTTCTCTGTTGACACACAAGTTGCATACATTCTAAGTCTCGGAGTAGTGAAGGAAAT
CAGAAAGCACGGCATAGGTTCTCTTTTACTTGAGACTTTAAAGGATCACATATCCACCACTGCCCAGGGCCACTGCAAAG
CCATCTACCTGCACGTCCTCACCAACAACAACACAGCAATAAGCTTCTACAAAAACAGAGATTTCAAGCAGCACCACTAT
CTCCCCTATTACTATTCCATCCGTGGGGTCCTCAAAGATGGCTTCACTTATGTCCTCTACATCAATGGTGGCCACCCTCC
CTGGACCATCTTATATCCT

Alignment

ORF - retro_mluc_1295 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.85 %
• Parental protein coverage: 78.78 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTEVVPSSALSEVSLRLLCHDDIDTVKHLCGDWFPIEYPDSWYRDITSNKKFFSLAATYRGTIVGMIVAE
          MTEVVPSSALSEVSLRLLCHDDIDTVKHLCGDWFPIEYPDSW.RDITSNKKFFSLAATYRGTIVGMIVAE
Retrocopy MTEVVPSSALSEVSLRLLCHDDIDTVKHLCGDWFPIEYPDSWDRDITSNKKFFSLAATYRGTIVGMIVAE

Parental  IKSRTKIHKEDGDILASNFSVDTQVAYILSLGVVKEFRKHGIGSLLLESLKDHISTTAQDHCKAIYLHVL
          IKSRTKIHKE.GDILASNFSVDTQVAYILSLGVVKE.RKHGIGSLLLE.LKDHISTTAQ.HCKAIYLHVL
Retrocopy IKSRTKIHKENGDILASNFSVDTQVAYILSLGVVKEIRKHGIGSLLLETLKDHISTTAQGHCKAIYLHVL

Parental  TTNNTAISFYENRDFKQHHYLPYYYSIRGVLKDGFTYVLYINGGHPPWTILSP
          T.NNTAISFY.NRDFKQHHYLPYYYSIRGVLKDGFTYVLYINGGHPPWTIL.P
Retrocopy TNNNTAISFYKNRDFKQHHYLPYYYSIRGVLKDGFTYVLYINGGHPPWTILYP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1295 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000005731	1 retrocopy	retro_cpor_151,
Echinops telfairi	ENSETEG00000014209	1 retrocopy	retro_etel_1344,
Myotis lucifugus	ENSMLUG00000017721	1 retrocopy	retro_mluc_1295 ,