RetrogeneDB ID: retro_mluc_1297

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429816:5511772..5512864(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WTAP
• Ensembl ID: ENSMLUG00000000721
• Aliases: None
• Description: None

Sequence

>retro_mluc_1297
ATGACCACCGAGGAACCTCTTCCCAAAAAGGTTCGACTGAGTGAGACAGACTTTCAAGTTATGGCACGAGATGAGTTGAT
TTTAAGATGGAAAGAGTATGAAGCATATGTGCAGGCTTTGGAGGACAAGTACACAGACCTGAACTCCAATGTAACTGGCT
TAAGGGAGTCAGCAGAAAAACTACAGCAACAACACGAAGCGTCTGCACACAGAAAAGACATCCTTGTCATGCGACTAGCA
ACCAAGGAGCGAGAGGTCCAAGAGTACACTGCTCAAATCCAGTACCTCCAGCAAGTCCAGCAGCCCGGTGCTGCCCCGCT
GACATCAACAGCGGCAGACCCCGCGATCAACTTCTTTTTCCTAAAAATGAGAGGTGAGCTGGACGAGACTAAAGACAAAC
TGGAACAAACCCGGAATGAACTGAGTGCCTGGAAGTTCACTCCTGAAAGCCAAACAGGCAAAGACGTCATGGTGAAATGC
CGAAGGCTTCTCCAGGAGAATCAGCAGCTTGGAAGGCAGGTGAACCGGCAACTTATTGCGCAACTTGAAGCAGAGTTGGC
TTTACAGAAGAAATACAGTGAGGAGCTTAAAAGCAGCCGGAGTGAACTGAATGACTTCATCATTCAGCTGGAGGAAGAAG
TAGAGGATATGCAGAGTACCATTCTAGTTCTACAGCAGCAACTGAAGGAGACGCGCCAGCAGTTGGCTCAGTACCAACAG
CAGCAGGCTCAAGCCCCAGCCCCAGGTACCAGCAGGACTACATCTGAGCCTGTGGGACAGGCAGAGGCCACAGGTAAAGA
CTGCAGTCGGCTGACCAATGGACCAAGCAACGGCAGTTCCTCCCGGCTGAGGACGTCTGGGTCTGGAGGTCACAGGGCGG
GGGACACGACCGAAGATGGCTTTCCTTCTTCTCCAGGGACTGGTAAGAAGGCCTCCAACAGCTCAGAGGAGAGAACTGGC
AAAGGAGGTAGTAGTTACATAAACCAACTCAGTGCGGGATAGGGAAGTATAGTCTCTCCCACGGGCAGTGAAAACTCTCT
CACACAGTGAAACGACATAGACTCCAATCATGACTCTCAAAAGGAAAAAACT

Alignment

ORF - retro_mluc_1297 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.29 %
• Parental protein coverage: 92.68 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESA
          MT.EEPLPKKVRLSETDF.VMARDELILRWK.YEAYVQALE.KYTDLNSN.VTGLRES.EKL.QQ...SA
Retrocopy MTTEEPLPKKVRLSETDFQVMARDELILRWKEYEAYVQALEDKYTDLNSN-VTGLRESAEKLQQQHEASA

Parental  RRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
          .R..ILVMRLATKE.E.QE.T.QIQYL.QVQQP..A.L.ST..DPAIN.FFLKM.GEL..TKDKLEQ..N
Retrocopy HRKDILVMRLATKEREVQEYTAQIQYLQQVQQPGAAPLTSTAADPAINFFFLKMRGELDETKDKLEQTRN

Parental  ELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ
          ELSAWKFTP.SQTGK..M.KCR.L.QENQ.LGRQ.....IAQLEAELALQKKYSEELKSS..ELNDFIIQ
Retrocopy ELSAWKFTPESQTGKDVMVKCRRLLQENQQLGRQVNRQLIAQLEAELALQKKYSEELKSSRSELNDFIIQ

Parental  LDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTSSEPVGQAEAPGKDCSRLANGPSNG
          L.EEVE.MQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTS.EPVGQAEA.GKDCSRL.NGPSNG
Retrocopy LEEEVEDMQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTS-EPVGQAEATGKDCSRLTNGPSNG

Parental  SSSRPRTSGSGCHREGDTTEDGFPSSPGNGNKASNSSEERTGKGGSSYVNQLSAGYESVDSPTGSENSLT
          SSSR.RTSGSG.HR.GDTTEDGFPSSPG.G.KASNSSEERTGKGGSSY.NQLSAG..S..SPTGSENSLT
Retrocopy SSSRLRTSGSGGHRAGDTTEDGFPSSPGTGKKASNSSEERTGKGGSSYINQLSAG*GSIVSPTGSENSLT

Parental  HHLNDTDSNHDPQEEKT
          ...ND.DSNHD.Q.EKT
Retrocopy -Q*NDIDSNHDSQKEKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1297 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007974	1 retrocopy	retro_btau_486,
Canis familiaris	ENSCAFG00000023207	2 retrocopies	retro_cfam_188, retro_cfam_229,
Myotis lucifugus	ENSMLUG00000000721	1 retrocopy	retro_mluc_1297 ,