RetrogeneDB ID: retro_mluc_1324

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429820:965594..966155(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000025468
• Aliases: None
• Description: None

Sequence

>retro_mluc_1324
TGTAAGGGTCAACCCCGTTTTCTTGCTCCTGCTTCTGCTATGGAAACCGGCCGCTCCAAGCTGTGCTATCTCAGCTATAA
ATTCATTGTCACTCCCAGTGATCAACCACGGTATAAAATTCAAGGCGAGGTAAGTGAGAGCACATTCCTTCATTATACCT
GCTGTAGCGAGAAGGTCAAACTCATCAGTGTTCAGGAGATGAAGGAGAATGCCACACAGGCCTGGGATCAACAGAGAGAC
TCTCTGAAATGCTGATGGAAGAGCTCAAAAAGATCCTGCTTGACACTGAAGCAGAGATCATTGCAACCAGCGATCCTCAC
TGCCTACTGGGCAGCATCATGTGTAAGCAGGAATCCAGTGTACTCACCAGTGCATCCTGGGAGTTTGGATTCGATGGACA
GATAATCTCTGCGCTTTGACTCAAAGAACAGAATCTGGGCAGTGTTGTGTGATGAAGGCAGACTGTTAAACAAGACATTG
GCAAGTGACAGAGCTATGACCGATCTCCTTGTTAGGGCCTCAACTGGAGACTGTAGGAAGTGACTCAAACAAGGTTTGTG
T

Alignment

ORF - retro_mluc_1324 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.02 %
• Parental protein coverage: 68.66 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  CFGNPPLLAVSWGIESGPGAPS-LGYKFTVTPNGQPWCEIQGQVNGNTFLHYTCGGNKVKLISVLEM--N
          C.G.P..LA.....E.G......L.YKF.VTP..QP...IQG.V...TFLHYTC...KVKLISV.EM..N
Retrocopy CKGQPRFLAPASAMETGRSKLCYLSYKFIVTPSDQPRYKIQGEVSESTFLHYTCCSEKVKLISVQEMKEN

Parental  ATQAWSEQRDAL-QYVVEELKKTLLDIKAEIPATSGPHSLQGSMMCEQESNVLIAASWEFGLDGQI-SLR
          ATQAW..QRD.L.....EELKK.LLD..AEI.ATS.PH.L.GS.MC.QES.VL..ASWEFG.DGQI.SLR
Retrocopy ATQAWDQQRDSL<EMLMEELKKILLDTEAEIIATSDPHCLLGSIMCKQESSVLTSASWEFGFDGQI>SLR

Parental  FDSKNGHWTVLHGEGILLKQTLASDRAMTDLLVRTSAGDCRKWLEQVLC
          FDSKN..W.VL..EG.LL..TLASDRAMTDLLVR.S.GDCRK.L.Q.LC
Retrocopy FDSKNRIWAVLCDEGRLLNKTLASDRAMTDLLVRASTGDCRK*LKQGLC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1324 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000399	2 retrocopies	retro_cfam_1528, retro_cfam_432,
Myotis lucifugus	ENSMLUG00000025468	1 retrocopy	retro_mluc_1324 ,
Ictidomys tridecemlineatus	ENSSTOG00000001385	1 retrocopy	retro_itri_597,