RetrogeneDB ID: retro_mluc_1326

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429820:5150130..5150448(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016460
• Aliases: None
• Description: None

Sequence

>retro_mluc_1326
AAGAATATTTCATGTTTGTCAAAGTACTATGCTGAACTAGAATCTCTTAGCAAGTAGGAAGCTGCCGGGGCTGCACTACA
CTGAGAGCCAAGGAATATGCAAGCGCTGGAGAGCTGGTGGATACTGAGGTGGCATTGCTTTGAGCTCACTGGGAGAAAAA
GAAGACAAGCCTAACAGAGTTGGGAACAGTTTCAGCAGCTGCCACATTTAACAGCAGGTGTAGGGTCCATGACAGCAAAT
CTGACTCACGTAGAGGCGAGTTTTGAAGAGGTAGAAAACCACCTGCTGAATCTACAGGATTTATGTGAATGGTGTGAA

Alignment

ORF - retro_mluc_1326 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.39 %
• Parental protein coverage: 70.39 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RTVSYLPKYSAGLELLSRYEDTWAALH-RRAKECASAGELVDSEVVMLSAHWEKKKTSLI-ELQEQLQQL
          ...S.L.KY.A.LE.LS..E...AALH..RAKE.ASAGELVD.EV..L.AHWE.KK........EQ.QQL
Retrocopy KNISCLSKYYAELESLSK*EAAGAALH<LRAKEYASAGELVDTEVALL*AHWE-KKKTSL>QSWEQFQQL

Parental  PGLIADLESMTANLMHLETSFEEVENHLLNLEDLCAQCE
          P.L.A...SMTANL.H.E.SFEEVENHLLNL.DLC..CE
Retrocopy PHLTAGVGSMTANLTHVEASFEEVENHLLNLQDLCEWCE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1326 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014875	2 retrocopies	retro_meug_1956, retro_meug_263,
Myotis lucifugus	ENSMLUG00000016460	1 retrocopy	retro_mluc_1326 ,